Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahK and araH are separated by 86 nucleotides araH and araH overlap by 4 nucleotides araH and ccmA overlap by 8 nucleotides
HEPCGN_07515: yahK - NADPH-dependent aldehyde reductase YahK, at 241,356 to 242,405
yahK
HEPCGN_07520: araH - sugar ABC transporter permease, at 242,492 to 243,448
araH
HEPCGN_07525: araH - sugar ABC transporter permease, at 243,445 to 244,416
araH
HEPCGN_07530: ccmA - heme ABC exporter ATP-binding protein CcmA, at 244,409 to 245,893
ccmA
Position (kb) 242
243
244 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 241.529 kb on + strand, within yahK at 241.643 kb on + strand, within yahK at 241.644 kb on - strand, within yahK at 241.659 kb on - strand, within yahK at 241.659 kb on - strand, within yahK at 241.671 kb on + strand, within yahK at 241.671 kb on + strand, within yahK at 241.736 kb on + strand, within yahK at 241.979 kb on + strand, within yahK at 242.033 kb on + strand, within yahK at 242.063 kb on + strand, within yahK at 242.065 kb on + strand, within yahK at 242.066 kb on - strand, within yahK at 242.127 kb on - strand, within yahK at 242.240 kb on - strand, within yahK at 242.380 kb on + strand at 242.380 kb on + strand at 242.381 kb on - strand at 242.381 kb on - strand at 242.422 kb on + strand at 242.422 kb on + strand at 242.422 kb on + strand at 242.423 kb on - strand at 242.426 kb on + strand at 242.427 kb on - strand at 242.427 kb on - strand at 242.427 kb on - strand at 242.433 kb on - strand at 242.433 kb on - strand at 242.449 kb on + strand at 242.480 kb on + strand at 242.483 kb on - strand at 242.483 kb on - strand at 242.582 kb on + strand at 242.583 kb on - strand at 242.584 kb on + strand at 242.584 kb on + strand at 242.593 kb on + strand, within araH at 242.716 kb on - strand, within araH at 242.728 kb on - strand, within araH at 242.910 kb on - strand, within araH at 243.004 kb on - strand, within araH at 243.038 kb on - strand, within araH at 243.122 kb on + strand, within araH at 243.131 kb on + strand, within araH at 243.163 kb on + strand, within araH at 243.164 kb on - strand, within araH at 243.175 kb on + strand, within araH at 243.176 kb on - strand, within araH at 243.242 kb on + strand, within araH at 243.244 kb on + strand, within araH at 243.245 kb on - strand, within araH at 243.245 kb on - strand, within araH at 243.370 kb on + strand at 243.371 kb on - strand at 243.371 kb on - strand at 243.392 kb on + strand at 243.392 kb on + strand at 243.393 kb on - strand at 243.427 kb on + strand at 243.633 kb on + strand, within araH at 243.633 kb on + strand, within araH at 243.724 kb on + strand, within araH at 243.725 kb on - strand, within araH at 243.762 kb on - strand, within araH at 243.848 kb on - strand, within araH at 243.891 kb on + strand, within araH at 243.924 kb on - strand, within araH at 243.961 kb on + strand, within araH at 244.054 kb on - strand, within araH at 244.065 kb on + strand, within araH at 244.065 kb on + strand, within araH at 244.066 kb on - strand, within araH at 244.105 kb on + strand, within araH at 244.105 kb on + strand, within araH at 244.114 kb on + strand, within araH at 244.114 kb on + strand, within araH at 244.227 kb on + strand, within araH at 244.227 kb on + strand, within araH at 244.276 kb on - strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.289 kb on + strand, within araH at 244.290 kb on - strand, within araH at 244.294 kb on - strand, within araH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 241,529 + yahK HEPCGN_07515 0.16 -0.5 241,643 + yahK HEPCGN_07515 0.27 +0.3 241,644 - yahK HEPCGN_07515 0.27 +0.6 241,659 - yahK HEPCGN_07515 0.29 +1.4 241,659 - yahK HEPCGN_07515 0.29 +0.1 241,671 + yahK HEPCGN_07515 0.30 +0.8 241,671 + yahK HEPCGN_07515 0.30 -0.5 241,736 + yahK HEPCGN_07515 0.36 -0.0 241,979 + yahK HEPCGN_07515 0.59 -0.2 242,033 + yahK HEPCGN_07515 0.64 +0.4 242,063 + yahK HEPCGN_07515 0.67 +0.1 242,065 + yahK HEPCGN_07515 0.68 -3.3 242,066 - yahK HEPCGN_07515 0.68 +0.6 242,127 - yahK HEPCGN_07515 0.73 +0.7 242,240 - yahK HEPCGN_07515 0.84 +0.2 242,380 + +0.7 242,380 + +0.4 242,381 - +0.6 242,381 - +0.5 242,422 + +1.0 242,422 + +1.0 242,422 + +0.2 242,423 - -1.6 242,426 + +0.7 242,427 - -0.6 242,427 - +0.7 242,427 - +2.4 242,433 - +0.0 242,433 - -0.3 242,449 + +0.1 242,480 + -0.1 242,483 - +0.1 242,483 - +0.3 242,582 + -0.3 242,583 - +0.2 242,584 + +0.1 242,584 + +0.8 242,593 + araH HEPCGN_07520 0.11 -1.3 242,716 - araH HEPCGN_07520 0.23 +2.4 242,728 - araH HEPCGN_07520 0.25 -3.8 242,910 - araH HEPCGN_07520 0.44 -0.3 243,004 - araH HEPCGN_07520 0.54 +0.5 243,038 - araH HEPCGN_07520 0.57 +1.5 243,122 + araH HEPCGN_07520 0.66 +0.4 243,131 + araH HEPCGN_07520 0.67 +2.5 243,163 + araH HEPCGN_07520 0.70 +1.3 243,164 - araH HEPCGN_07520 0.70 +1.0 243,175 + araH HEPCGN_07520 0.71 +2.0 243,176 - araH HEPCGN_07520 0.71 +0.1 243,242 + araH HEPCGN_07520 0.78 +0.6 243,244 + araH HEPCGN_07520 0.79 +0.2 243,245 - araH HEPCGN_07520 0.79 -0.1 243,245 - araH HEPCGN_07520 0.79 +0.2 243,370 + +0.2 243,371 - +0.4 243,371 - -0.5 243,392 + -0.4 243,392 + -0.5 243,393 - -1.4 243,427 + +0.3 243,633 + araH HEPCGN_07525 0.19 -0.4 243,633 + araH HEPCGN_07525 0.19 -0.5 243,724 + araH HEPCGN_07525 0.29 -0.9 243,725 - araH HEPCGN_07525 0.29 -0.1 243,762 - araH HEPCGN_07525 0.33 -0.1 243,848 - araH HEPCGN_07525 0.41 +0.1 243,891 + araH HEPCGN_07525 0.46 +0.4 243,924 - araH HEPCGN_07525 0.49 -0.8 243,961 + araH HEPCGN_07525 0.53 +0.1 244,054 - araH HEPCGN_07525 0.63 +0.1 244,065 + araH HEPCGN_07525 0.64 +0.6 244,065 + araH HEPCGN_07525 0.64 +0.1 244,066 - araH HEPCGN_07525 0.64 -0.4 244,105 + araH HEPCGN_07525 0.68 +1.1 244,105 + araH HEPCGN_07525 0.68 +0.3 244,114 + araH HEPCGN_07525 0.69 -0.5 244,114 + araH HEPCGN_07525 0.69 +0.0 244,227 + araH HEPCGN_07525 0.80 -0.4 244,227 + araH HEPCGN_07525 0.80 +0.5 244,276 - araH HEPCGN_07525 0.85 +0.3 244,289 + araH HEPCGN_07525 0.87 +0.4 244,289 + araH HEPCGN_07525 0.87 +0.9 244,289 + araH HEPCGN_07525 0.87 -0.2 244,289 + araH HEPCGN_07525 0.87 +0.5 244,290 - araH HEPCGN_07525 0.87 +1.2 244,294 - araH HEPCGN_07525 0.87 +0.4
Or see this region's nucleotide sequence