Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiW and sbmA are separated by 12 nucleotides sbmA and HEPCGN_07300 are separated by 204 nucleotides HEPCGN_07300 and ampH are separated by 45 nucleotides
HEPCGN_07290: yaiW - surface-exposed outer membrane lipoprotein YaiW, at 190,175 to 191,269
yaiW
HEPCGN_07295: sbmA - peptide antibiotic transporter SbmA, at 191,282 to 192,502
sbmA
HEPCGN_07300: HEPCGN_07300 - hypothetical protein, at 192,707 to 192,808
_07300
HEPCGN_07305: ampH - D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH, at 192,854 to 194,011
ampH
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 190.586 kb on + strand, within yaiW at 190.599 kb on + strand, within yaiW at 190.626 kb on + strand, within yaiW at 190.627 kb on - strand, within yaiW at 190.630 kb on + strand, within yaiW at 190.708 kb on + strand, within yaiW at 190.708 kb on + strand, within yaiW at 190.843 kb on + strand, within yaiW at 190.976 kb on + strand, within yaiW at 191.005 kb on - strand, within yaiW at 191.203 kb on + strand at 191.250 kb on - strand at 191.270 kb on + strand at 191.271 kb on - strand at 191.271 kb on - strand at 191.283 kb on + strand at 191.301 kb on - strand at 191.355 kb on + strand at 191.356 kb on - strand at 191.356 kb on - strand at 191.359 kb on + strand at 191.393 kb on - strand at 191.461 kb on + strand, within sbmA at 191.526 kb on + strand, within sbmA at 191.527 kb on - strand, within sbmA at 191.550 kb on + strand, within sbmA at 191.551 kb on - strand, within sbmA at 191.551 kb on - strand, within sbmA at 191.551 kb on - strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.554 kb on + strand, within sbmA at 191.555 kb on - strand, within sbmA at 191.556 kb on + strand, within sbmA at 191.662 kb on + strand, within sbmA at 191.954 kb on - strand, within sbmA at 191.982 kb on + strand, within sbmA at 191.983 kb on - strand, within sbmA at 191.983 kb on - strand, within sbmA at 192.019 kb on - strand, within sbmA at 192.157 kb on - strand, within sbmA at 192.157 kb on - strand, within sbmA at 192.168 kb on + strand, within sbmA at 192.233 kb on - strand, within sbmA at 192.239 kb on + strand, within sbmA at 192.270 kb on + strand, within sbmA at 192.313 kb on - strand, within sbmA at 192.313 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.316 kb on - strand, within sbmA at 192.430 kb on + strand at 192.497 kb on - strand at 192.497 kb on - strand at 192.503 kb on - strand at 192.531 kb on + strand at 192.675 kb on - strand at 192.675 kb on - strand at 192.753 kb on - strand, within HEPCGN_07300 at 192.760 kb on + strand, within HEPCGN_07300 at 192.766 kb on + strand, within HEPCGN_07300 at 192.766 kb on + strand, within HEPCGN_07300 at 192.767 kb on - strand, within HEPCGN_07300 at 192.806 kb on + strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.807 kb on - strand at 192.811 kb on + strand at 192.825 kb on + strand at 192.862 kb on + strand at 192.863 kb on - strand at 192.952 kb on + strand at 192.976 kb on + strand, within ampH at 193.106 kb on - strand, within ampH at 193.126 kb on - strand, within ampH at 193.176 kb on + strand, within ampH at 193.192 kb on + strand, within ampH at 193.192 kb on + strand, within ampH at 193.193 kb on - strand, within ampH at 193.193 kb on - strand, within ampH at 193.193 kb on - strand, within ampH at 193.197 kb on - strand, within ampH at 193.197 kb on - strand, within ampH at 193.226 kb on + strand, within ampH at 193.460 kb on + strand, within ampH at 193.462 kb on + strand, within ampH at 193.462 kb on + strand, within ampH at 193.463 kb on - strand, within ampH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 190,586 + yaiW HEPCGN_07290 0.38 -0.1 190,599 + yaiW HEPCGN_07290 0.39 -3.6 190,626 + yaiW HEPCGN_07290 0.41 -0.1 190,627 - yaiW HEPCGN_07290 0.41 -0.7 190,630 + yaiW HEPCGN_07290 0.42 -1.2 190,708 + yaiW HEPCGN_07290 0.49 -0.8 190,708 + yaiW HEPCGN_07290 0.49 +0.3 190,843 + yaiW HEPCGN_07290 0.61 -0.0 190,976 + yaiW HEPCGN_07290 0.73 +1.5 191,005 - yaiW HEPCGN_07290 0.76 +0.8 191,203 + -0.1 191,250 - -0.5 191,270 + -3.2 191,271 - -2.2 191,271 - -0.4 191,283 + +1.2 191,301 - -0.7 191,355 + +0.4 191,356 - +0.5 191,356 - +0.1 191,359 + -0.4 191,393 - -0.9 191,461 + sbmA HEPCGN_07295 0.15 -0.7 191,526 + sbmA HEPCGN_07295 0.20 -1.5 191,527 - sbmA HEPCGN_07295 0.20 -0.5 191,550 + sbmA HEPCGN_07295 0.22 -2.3 191,551 - sbmA HEPCGN_07295 0.22 +0.3 191,551 - sbmA HEPCGN_07295 0.22 +0.3 191,551 - sbmA HEPCGN_07295 0.22 -0.3 191,554 + sbmA HEPCGN_07295 0.22 +2.8 191,554 + sbmA HEPCGN_07295 0.22 -1.4 191,554 + sbmA HEPCGN_07295 0.22 -1.7 191,554 + sbmA HEPCGN_07295 0.22 -0.7 191,555 - sbmA HEPCGN_07295 0.22 +0.1 191,556 + sbmA HEPCGN_07295 0.22 +0.2 191,662 + sbmA HEPCGN_07295 0.31 +0.0 191,954 - sbmA HEPCGN_07295 0.55 -0.5 191,982 + sbmA HEPCGN_07295 0.57 +0.0 191,983 - sbmA HEPCGN_07295 0.57 +0.2 191,983 - sbmA HEPCGN_07295 0.57 -0.6 192,019 - sbmA HEPCGN_07295 0.60 +0.8 192,157 - sbmA HEPCGN_07295 0.72 -0.7 192,157 - sbmA HEPCGN_07295 0.72 -0.5 192,168 + sbmA HEPCGN_07295 0.73 -0.3 192,233 - sbmA HEPCGN_07295 0.78 +1.1 192,239 + sbmA HEPCGN_07295 0.78 -0.4 192,270 + sbmA HEPCGN_07295 0.81 -0.4 192,313 - sbmA HEPCGN_07295 0.84 +0.9 192,313 - sbmA HEPCGN_07295 0.84 +1.3 192,316 - sbmA HEPCGN_07295 0.85 -0.3 192,316 - sbmA HEPCGN_07295 0.85 -0.6 192,316 - sbmA HEPCGN_07295 0.85 -2.1 192,316 - sbmA HEPCGN_07295 0.85 +0.6 192,430 + -0.3 192,497 - -0.5 192,497 - -0.1 192,503 - +0.1 192,531 + -1.0 192,675 - -0.3 192,675 - +1.5 192,753 - HEPCGN_07300 0.45 -0.0 192,760 + HEPCGN_07300 0.52 -1.1 192,766 + HEPCGN_07300 0.58 +1.6 192,766 + HEPCGN_07300 0.58 +0.2 192,767 - HEPCGN_07300 0.59 -0.2 192,806 + +0.1 192,807 - +0.4 192,807 - +0.4 192,807 - +0.5 192,807 - +0.3 192,807 - -3.2 192,811 + +0.1 192,825 + +0.3 192,862 + +0.5 192,863 - -1.9 192,952 + -0.6 192,976 + ampH HEPCGN_07305 0.11 +0.3 193,106 - ampH HEPCGN_07305 0.22 -3.0 193,126 - ampH HEPCGN_07305 0.23 -0.4 193,176 + ampH HEPCGN_07305 0.28 +0.2 193,192 + ampH HEPCGN_07305 0.29 -1.2 193,192 + ampH HEPCGN_07305 0.29 +0.2 193,193 - ampH HEPCGN_07305 0.29 -0.1 193,193 - ampH HEPCGN_07305 0.29 -0.1 193,193 - ampH HEPCGN_07305 0.29 +0.4 193,197 - ampH HEPCGN_07305 0.30 +0.4 193,197 - ampH HEPCGN_07305 0.30 -0.1 193,226 + ampH HEPCGN_07305 0.32 -0.2 193,460 + ampH HEPCGN_07305 0.52 +0.2 193,462 + ampH HEPCGN_07305 0.53 -1.0 193,462 + ampH HEPCGN_07305 0.53 -0.6 193,463 - ampH HEPCGN_07305 0.53 +0.4
Or see this region's nucleotide sequence