Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04770 and yebE are separated by 59 nucleotides yebE and ptrB are separated by 206 nucleotides ptrB and exoX overlap by 4 nucleotides exoX and yobB are separated by 23 nucleotides
HEPCGN_04770: HEPCGN_04770 - hypothetical protein, at 832,930 to 833,040
_04770
HEPCGN_04775: yebE - Inner membrane protein YebE, at 833,100 to 833,759
yebE
HEPCGN_04780: ptrB - oligopeptidase B, at 833,966 to 836,026
ptrB
HEPCGN_04785: exoX - exodeoxyribonuclease X, at 836,023 to 836,685
exoX
HEPCGN_04790: yobB - Uncharacterized protein YobB, at 836,709 to 837,365
yobB
Position (kb) 833
834
835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 833.067 kb on - strand at 833.337 kb on - strand, within yebE at 833.453 kb on + strand, within yebE at 833.524 kb on + strand, within yebE at 833.525 kb on - strand, within yebE at 833.525 kb on - strand, within yebE at 833.636 kb on + strand, within yebE at 833.935 kb on - strand at 833.935 kb on - strand at 833.936 kb on + strand at 833.936 kb on + strand at 833.937 kb on - strand at 833.937 kb on - strand at 834.033 kb on - strand at 834.081 kb on - strand at 834.102 kb on - strand at 834.150 kb on + strand at 834.197 kb on + strand, within ptrB at 834.198 kb on - strand, within ptrB at 834.198 kb on - strand, within ptrB at 834.198 kb on - strand, within ptrB at 834.230 kb on + strand, within ptrB at 834.249 kb on - strand, within ptrB at 834.253 kb on + strand, within ptrB at 834.257 kb on + strand, within ptrB at 834.257 kb on + strand, within ptrB at 834.524 kb on + strand, within ptrB at 834.528 kb on - strand, within ptrB at 834.561 kb on - strand, within ptrB at 834.631 kb on + strand, within ptrB at 834.631 kb on + strand, within ptrB at 834.632 kb on - strand, within ptrB at 834.635 kb on + strand, within ptrB at 834.635 kb on + strand, within ptrB at 834.636 kb on - strand, within ptrB at 834.638 kb on + strand, within ptrB at 834.639 kb on - strand, within ptrB at 834.653 kb on - strand, within ptrB at 834.653 kb on - strand, within ptrB at 834.671 kb on + strand, within ptrB at 834.672 kb on - strand, within ptrB at 834.675 kb on + strand, within ptrB at 834.676 kb on - strand, within ptrB at 834.676 kb on - strand, within ptrB at 834.797 kb on + strand, within ptrB at 834.797 kb on + strand, within ptrB at 834.851 kb on + strand, within ptrB at 834.851 kb on + strand, within ptrB at 834.851 kb on + strand, within ptrB at 834.851 kb on + strand, within ptrB at 834.852 kb on - strand, within ptrB at 834.908 kb on - strand, within ptrB at 834.913 kb on + strand, within ptrB at 834.913 kb on + strand, within ptrB at 835.044 kb on - strand, within ptrB at 835.123 kb on + strand, within ptrB at 835.268 kb on + strand, within ptrB at 835.339 kb on + strand, within ptrB at 835.443 kb on - strand, within ptrB at 835.475 kb on - strand, within ptrB at 835.513 kb on - strand, within ptrB at 835.651 kb on - strand, within ptrB at 835.731 kb on - strand, within ptrB at 835.830 kb on - strand at 835.891 kb on - strand at 835.927 kb on + strand at 836.235 kb on + strand, within exoX at 836.236 kb on - strand, within exoX at 836.236 kb on - strand, within exoX at 836.238 kb on + strand, within exoX at 836.262 kb on + strand, within exoX at 836.264 kb on + strand, within exoX at 836.265 kb on - strand, within exoX at 836.265 kb on - strand, within exoX at 836.273 kb on + strand, within exoX at 836.274 kb on - strand, within exoX at 836.331 kb on + strand, within exoX at 836.332 kb on - strand, within exoX at 836.334 kb on - strand, within exoX at 836.334 kb on - strand, within exoX at 836.335 kb on + strand, within exoX at 836.336 kb on - strand, within exoX at 836.343 kb on + strand, within exoX at 836.389 kb on - strand, within exoX at 836.456 kb on + strand, within exoX at 836.457 kb on - strand, within exoX at 836.457 kb on - strand, within exoX at 836.471 kb on + strand, within exoX at 836.472 kb on - strand, within exoX at 836.474 kb on + strand, within exoX at 836.556 kb on + strand, within exoX at 836.559 kb on + strand, within exoX at 836.559 kb on + strand, within exoX at 836.674 kb on - strand at 836.828 kb on + strand, within yobB at 836.966 kb on + strand, within yobB at 836.966 kb on + strand, within yobB at 836.966 kb on + strand, within yobB at 836.966 kb on + strand, within yobB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 833,067 - +0.2 833,337 - yebE HEPCGN_04775 0.36 +1.4 833,453 + yebE HEPCGN_04775 0.53 -0.1 833,524 + yebE HEPCGN_04775 0.64 +0.7 833,525 - yebE HEPCGN_04775 0.64 -1.5 833,525 - yebE HEPCGN_04775 0.64 -0.2 833,636 + yebE HEPCGN_04775 0.81 -0.3 833,935 - -0.2 833,935 - -1.0 833,936 + +0.6 833,936 + -0.2 833,937 - +0.1 833,937 - +1.2 834,033 - +0.3 834,081 - +0.3 834,102 - -1.4 834,150 + -0.9 834,197 + ptrB HEPCGN_04780 0.11 -0.1 834,198 - ptrB HEPCGN_04780 0.11 +1.4 834,198 - ptrB HEPCGN_04780 0.11 +1.3 834,198 - ptrB HEPCGN_04780 0.11 +1.5 834,230 + ptrB HEPCGN_04780 0.13 -0.5 834,249 - ptrB HEPCGN_04780 0.14 -0.5 834,253 + ptrB HEPCGN_04780 0.14 +0.2 834,257 + ptrB HEPCGN_04780 0.14 +0.9 834,257 + ptrB HEPCGN_04780 0.14 -2.7 834,524 + ptrB HEPCGN_04780 0.27 +0.7 834,528 - ptrB HEPCGN_04780 0.27 -2.1 834,561 - ptrB HEPCGN_04780 0.29 +0.6 834,631 + ptrB HEPCGN_04780 0.32 +0.4 834,631 + ptrB HEPCGN_04780 0.32 +0.7 834,632 - ptrB HEPCGN_04780 0.32 +0.5 834,635 + ptrB HEPCGN_04780 0.32 -0.2 834,635 + ptrB HEPCGN_04780 0.32 -0.3 834,636 - ptrB HEPCGN_04780 0.33 +0.5 834,638 + ptrB HEPCGN_04780 0.33 +0.1 834,639 - ptrB HEPCGN_04780 0.33 +0.1 834,653 - ptrB HEPCGN_04780 0.33 +0.1 834,653 - ptrB HEPCGN_04780 0.33 +0.1 834,671 + ptrB HEPCGN_04780 0.34 +0.8 834,672 - ptrB HEPCGN_04780 0.34 +0.4 834,675 + ptrB HEPCGN_04780 0.34 -0.9 834,676 - ptrB HEPCGN_04780 0.34 -1.4 834,676 - ptrB HEPCGN_04780 0.34 +0.4 834,797 + ptrB HEPCGN_04780 0.40 -0.3 834,797 + ptrB HEPCGN_04780 0.40 +0.4 834,851 + ptrB HEPCGN_04780 0.43 -0.6 834,851 + ptrB HEPCGN_04780 0.43 -0.5 834,851 + ptrB HEPCGN_04780 0.43 +0.4 834,851 + ptrB HEPCGN_04780 0.43 +0.4 834,852 - ptrB HEPCGN_04780 0.43 -1.4 834,908 - ptrB HEPCGN_04780 0.46 -3.1 834,913 + ptrB HEPCGN_04780 0.46 +0.2 834,913 + ptrB HEPCGN_04780 0.46 +0.7 835,044 - ptrB HEPCGN_04780 0.52 +0.6 835,123 + ptrB HEPCGN_04780 0.56 +1.1 835,268 + ptrB HEPCGN_04780 0.63 -0.6 835,339 + ptrB HEPCGN_04780 0.67 -0.5 835,443 - ptrB HEPCGN_04780 0.72 +0.3 835,475 - ptrB HEPCGN_04780 0.73 -0.6 835,513 - ptrB HEPCGN_04780 0.75 -1.5 835,651 - ptrB HEPCGN_04780 0.82 -1.3 835,731 - ptrB HEPCGN_04780 0.86 -0.7 835,830 - -1.4 835,891 - -3.1 835,927 + +0.1 836,235 + exoX HEPCGN_04785 0.32 -0.3 836,236 - exoX HEPCGN_04785 0.32 -1.4 836,236 - exoX HEPCGN_04785 0.32 +0.3 836,238 + exoX HEPCGN_04785 0.32 +0.9 836,262 + exoX HEPCGN_04785 0.36 +1.3 836,264 + exoX HEPCGN_04785 0.36 -0.9 836,265 - exoX HEPCGN_04785 0.37 +0.1 836,265 - exoX HEPCGN_04785 0.37 -2.1 836,273 + exoX HEPCGN_04785 0.38 +1.1 836,274 - exoX HEPCGN_04785 0.38 +0.1 836,331 + exoX HEPCGN_04785 0.46 +0.1 836,332 - exoX HEPCGN_04785 0.47 -0.5 836,334 - exoX HEPCGN_04785 0.47 -0.0 836,334 - exoX HEPCGN_04785 0.47 -1.8 836,335 + exoX HEPCGN_04785 0.47 -0.2 836,336 - exoX HEPCGN_04785 0.47 -0.2 836,343 + exoX HEPCGN_04785 0.48 -0.0 836,389 - exoX HEPCGN_04785 0.55 -0.9 836,456 + exoX HEPCGN_04785 0.65 +0.6 836,457 - exoX HEPCGN_04785 0.65 -0.2 836,457 - exoX HEPCGN_04785 0.65 -0.4 836,471 + exoX HEPCGN_04785 0.68 -0.2 836,472 - exoX HEPCGN_04785 0.68 -1.3 836,474 + exoX HEPCGN_04785 0.68 -0.9 836,556 + exoX HEPCGN_04785 0.80 -0.1 836,559 + exoX HEPCGN_04785 0.81 +0.1 836,559 + exoX HEPCGN_04785 0.81 +0.0 836,674 - -2.1 836,828 + yobB HEPCGN_04790 0.18 -0.6 836,966 + yobB HEPCGN_04790 0.39 -2.9 836,966 + yobB HEPCGN_04790 0.39 +0.3 836,966 + yobB HEPCGN_04790 0.39 -0.5 836,966 + yobB HEPCGN_04790 0.39 +0.7
Or see this region's nucleotide sequence