Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04235

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHEPCGN_04225 and HEPCGN_04230 are separated by 54 nucleotidesHEPCGN_04230 and HEPCGN_04235 are separated by 150 nucleotidesHEPCGN_04235 and HEPCGN_04240 are separated by 12 nucleotidesHEPCGN_04240 and HEPCGN_04245 are separated by 26 nucleotides HEPCGN_04225: HEPCGN_04225 - phage major tail tube protein, at 740,472 to 740,984 _04225 HEPCGN_04230: HEPCGN_04230 - phage tail protein, at 741,039 to 741,404 _04230 HEPCGN_04235: HEPCGN_04235 - phage tail tape measure protein, at 741,555 to 744,362 _04235 HEPCGN_04240: HEPCGN_04240 - oxidoreductase, at 744,375 to 744,863 _04240 HEPCGN_04245: HEPCGN_04245 - DNA-invertase, at 744,890 to 745,489 _04245 Position (kb) 741 742 743 744 745Strain fitness (log2 ratio) -2 -1 0 1at 740.612 kb on - strand, within HEPCGN_04225at 740.616 kb on - strand, within HEPCGN_04225at 740.616 kb on - strand, within HEPCGN_04225at 740.739 kb on + strand, within HEPCGN_04225at 740.739 kb on + strand, within HEPCGN_04225at 740.739 kb on + strand, within HEPCGN_04225at 740.743 kb on - strand, within HEPCGN_04225at 740.845 kb on - strand, within HEPCGN_04225at 740.865 kb on + strand, within HEPCGN_04225at 740.986 kb on - strandat 740.986 kb on - strandat 740.989 kb on + strandat 740.989 kb on + strandat 740.989 kb on + strandat 740.990 kb on - strandat 741.115 kb on + strand, within HEPCGN_04230at 741.115 kb on + strand, within HEPCGN_04230at 741.160 kb on - strand, within HEPCGN_04230at 741.160 kb on - strand, within HEPCGN_04230at 741.160 kb on - strand, within HEPCGN_04230at 741.180 kb on - strand, within HEPCGN_04230at 741.251 kb on + strand, within HEPCGN_04230at 741.429 kb on + strandat 741.429 kb on + strandat 741.430 kb on - strandat 741.430 kb on - strandat 741.430 kb on - strandat 741.779 kb on + strandat 741.842 kb on - strand, within HEPCGN_04235at 741.987 kb on + strand, within HEPCGN_04235at 742.365 kb on - strand, within HEPCGN_04235at 742.367 kb on + strand, within HEPCGN_04235at 742.410 kb on - strand, within HEPCGN_04235at 742.411 kb on + strand, within HEPCGN_04235at 742.411 kb on + strand, within HEPCGN_04235at 742.412 kb on - strand, within HEPCGN_04235at 742.421 kb on + strand, within HEPCGN_04235at 742.511 kb on - strand, within HEPCGN_04235at 742.536 kb on + strand, within HEPCGN_04235at 742.536 kb on + strand, within HEPCGN_04235at 742.566 kb on - strand, within HEPCGN_04235at 743.128 kb on + strand, within HEPCGN_04235at 743.129 kb on - strand, within HEPCGN_04235at 743.135 kb on - strand, within HEPCGN_04235at 743.355 kb on - strand, within HEPCGN_04235at 743.591 kb on + strand, within HEPCGN_04235at 743.672 kb on + strand, within HEPCGN_04235at 743.856 kb on - strand, within HEPCGN_04235at 743.978 kb on + strand, within HEPCGN_04235at 744.053 kb on + strand, within HEPCGN_04235at 744.072 kb on - strand, within HEPCGN_04235at 744.074 kb on + strand, within HEPCGN_04235at 744.158 kb on - strandat 744.185 kb on - strandat 744.348 kb on + strandat 744.387 kb on + strandat 744.387 kb on + strandat 744.433 kb on + strand, within HEPCGN_04240at 744.498 kb on + strand, within HEPCGN_04240at 744.499 kb on - strand, within HEPCGN_04240at 744.597 kb on + strand, within HEPCGN_04240at 744.597 kb on + strand, within HEPCGN_04240at 744.597 kb on + strand, within HEPCGN_04240at 744.598 kb on - strand, within HEPCGN_04240at 744.599 kb on + strand, within HEPCGN_04240at 744.600 kb on - strand, within HEPCGN_04240at 744.600 kb on - strand, within HEPCGN_04240at 744.600 kb on - strand, within HEPCGN_04240at 744.643 kb on - strand, within HEPCGN_04240at 744.643 kb on - strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.651 kb on + strand, within HEPCGN_04240at 744.652 kb on - strand, within HEPCGN_04240at 744.652 kb on - strand, within HEPCGN_04240at 744.671 kb on + strand, within HEPCGN_04240at 744.788 kb on + strand, within HEPCGN_04240at 744.789 kb on - strand, within HEPCGN_04240at 744.789 kb on - strand, within HEPCGN_04240at 744.810 kb on - strand, within HEPCGN_04240at 744.938 kb on + strandat 744.938 kb on + strandat 744.958 kb on - strand, within HEPCGN_04245at 744.988 kb on - strand, within HEPCGN_04245at 745.123 kb on + strand, within HEPCGN_04245at 745.123 kb on + strand, within HEPCGN_04245at 745.124 kb on - strand, within HEPCGN_04245at 745.136 kb on + strand, within HEPCGN_04245at 745.261 kb on + strand, within HEPCGN_04245at 745.322 kb on - strand, within HEPCGN_04245at 745.334 kb on + strand, within HEPCGN_04245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
740,612 - HEPCGN_04225 0.27 -0.1
740,616 - HEPCGN_04225 0.28 -0.2
740,616 - HEPCGN_04225 0.28 +1.0
740,739 + HEPCGN_04225 0.52 -0.9
740,739 + HEPCGN_04225 0.52 -1.7
740,739 + HEPCGN_04225 0.52 +0.3
740,743 - HEPCGN_04225 0.53 -0.4
740,845 - HEPCGN_04225 0.73 +0.3
740,865 + HEPCGN_04225 0.77 -0.5
740,986 - -0.2
740,986 - -0.3
740,989 + -0.4
740,989 + -0.5
740,989 + -0.1
740,990 - +0.1
741,115 + HEPCGN_04230 0.21 -0.2
741,115 + HEPCGN_04230 0.21 +1.2
741,160 - HEPCGN_04230 0.33 -1.6
741,160 - HEPCGN_04230 0.33 +0.2
741,160 - HEPCGN_04230 0.33 -0.9
741,180 - HEPCGN_04230 0.39 -0.1
741,251 + HEPCGN_04230 0.58 -1.7
741,429 + +1.3
741,429 + -0.7
741,430 - +0.9
741,430 - +0.3
741,430 - -0.7
741,779 + -0.1
741,842 - HEPCGN_04235 0.10 -0.2
741,987 + HEPCGN_04235 0.15 +0.6
742,365 - HEPCGN_04235 0.29 +0.0
742,367 + HEPCGN_04235 0.29 -1.1
742,410 - HEPCGN_04235 0.30 -0.2
742,411 + HEPCGN_04235 0.30 +0.7
742,411 + HEPCGN_04235 0.30 +0.3
742,412 - HEPCGN_04235 0.31 +0.8
742,421 + HEPCGN_04235 0.31 +0.3
742,511 - HEPCGN_04235 0.34 -0.9
742,536 + HEPCGN_04235 0.35 +0.2
742,536 + HEPCGN_04235 0.35 -0.5
742,566 - HEPCGN_04235 0.36 +0.2
743,128 + HEPCGN_04235 0.56 +0.0
743,129 - HEPCGN_04235 0.56 +0.3
743,135 - HEPCGN_04235 0.56 -0.2
743,355 - HEPCGN_04235 0.64 -2.3
743,591 + HEPCGN_04235 0.73 +1.2
743,672 + HEPCGN_04235 0.75 +0.5
743,856 - HEPCGN_04235 0.82 +0.8
743,978 + HEPCGN_04235 0.86 +0.2
744,053 + HEPCGN_04235 0.89 +0.1
744,072 - HEPCGN_04235 0.90 +0.4
744,074 + HEPCGN_04235 0.90 +0.2
744,158 - -0.6
744,185 - +0.7
744,348 + -0.9
744,387 + -1.4
744,387 + -0.3
744,433 + HEPCGN_04240 0.12 -2.0
744,498 + HEPCGN_04240 0.25 +0.3
744,499 - HEPCGN_04240 0.25 -0.2
744,597 + HEPCGN_04240 0.45 +1.2
744,597 + HEPCGN_04240 0.45 +0.1
744,597 + HEPCGN_04240 0.45 +0.2
744,598 - HEPCGN_04240 0.46 +0.3
744,599 + HEPCGN_04240 0.46 -0.3
744,600 - HEPCGN_04240 0.46 +0.5
744,600 - HEPCGN_04240 0.46 +1.6
744,600 - HEPCGN_04240 0.46 +1.1
744,643 - HEPCGN_04240 0.55 +0.2
744,643 - HEPCGN_04240 0.55 -0.4
744,651 + HEPCGN_04240 0.56 -0.8
744,651 + HEPCGN_04240 0.56 -0.7
744,651 + HEPCGN_04240 0.56 +0.4
744,651 + HEPCGN_04240 0.56 +0.1
744,651 + HEPCGN_04240 0.56 +0.4
744,651 + HEPCGN_04240 0.56 +0.7
744,652 - HEPCGN_04240 0.57 -0.1
744,652 - HEPCGN_04240 0.57 +0.4
744,671 + HEPCGN_04240 0.61 -0.2
744,788 + HEPCGN_04240 0.84 +0.3
744,789 - HEPCGN_04240 0.85 +1.3
744,789 - HEPCGN_04240 0.85 +0.0
744,810 - HEPCGN_04240 0.89 +0.9
744,938 + -0.3
744,938 + +0.2
744,958 - HEPCGN_04245 0.11 -0.4
744,988 - HEPCGN_04245 0.16 +0.1
745,123 + HEPCGN_04245 0.39 +1.0
745,123 + HEPCGN_04245 0.39 -1.3
745,124 - HEPCGN_04245 0.39 -0.4
745,136 + HEPCGN_04245 0.41 +0.2
745,261 + HEPCGN_04245 0.62 -0.2
745,322 - HEPCGN_04245 0.72 -0.6
745,334 + HEPCGN_04245 0.74 -0.3

Or see this region's nucleotide sequence