Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedI and yodC are separated by 78 nucleotides yodC and yedQ are separated by 170 nucleotides yedQ and yedP overlap by 4 nucleotides
HEPCGN_03975: yedI - Inner membrane protein YedI, at 699,987 to 700,904
yedI
HEPCGN_03980: yodC - Uncharacterized protein YodC, at 700,983 to 701,165
yodC
HEPCGN_03985: yedQ - cellulose biosynthesis regulator YedQ, at 701,336 to 703,030
yedQ
HEPCGN_03990: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 703,027 to 703,842
yedP
Position (kb) 701
702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 700.418 kb on + strand, within yedI at 700.502 kb on + strand, within yedI at 700.537 kb on + strand, within yedI at 700.554 kb on + strand, within yedI at 700.733 kb on - strand, within yedI at 700.733 kb on - strand, within yedI at 700.739 kb on + strand, within yedI at 700.739 kb on + strand, within yedI at 700.805 kb on - strand, within yedI at 700.805 kb on - strand, within yedI at 700.903 kb on - strand at 700.918 kb on + strand at 700.918 kb on + strand at 700.991 kb on + strand at 701.060 kb on + strand, within yodC at 701.079 kb on + strand, within yodC at 701.079 kb on + strand, within yodC at 701.080 kb on - strand, within yodC at 701.172 kb on - strand at 701.242 kb on + strand at 701.243 kb on - strand at 701.258 kb on + strand at 701.265 kb on - strand at 701.414 kb on - strand at 701.446 kb on + strand at 701.489 kb on + strand at 701.490 kb on - strand at 701.490 kb on - strand at 701.490 kb on - strand at 701.490 kb on - strand at 701.492 kb on - strand at 701.507 kb on - strand, within yedQ at 701.733 kb on + strand, within yedQ at 701.734 kb on - strand, within yedQ at 701.734 kb on - strand, within yedQ at 701.811 kb on - strand, within yedQ at 701.861 kb on + strand, within yedQ at 701.862 kb on - strand, within yedQ at 701.882 kb on + strand, within yedQ at 701.909 kb on - strand, within yedQ at 701.920 kb on - strand, within yedQ at 701.933 kb on + strand, within yedQ at 701.997 kb on + strand, within yedQ at 702.074 kb on - strand, within yedQ at 702.077 kb on - strand, within yedQ at 702.077 kb on - strand, within yedQ at 702.086 kb on + strand, within yedQ at 702.122 kb on - strand, within yedQ at 702.122 kb on - strand, within yedQ at 702.171 kb on - strand, within yedQ at 702.187 kb on + strand, within yedQ at 702.305 kb on - strand, within yedQ at 702.317 kb on + strand, within yedQ at 702.318 kb on - strand, within yedQ at 702.323 kb on - strand, within yedQ at 702.375 kb on + strand, within yedQ at 702.454 kb on - strand, within yedQ at 702.454 kb on - strand, within yedQ at 702.497 kb on + strand, within yedQ at 702.497 kb on + strand, within yedQ at 702.497 kb on + strand, within yedQ at 702.497 kb on + strand, within yedQ at 702.497 kb on + strand, within yedQ at 702.497 kb on + strand, within yedQ at 702.498 kb on - strand, within yedQ at 702.498 kb on - strand, within yedQ at 702.498 kb on - strand, within yedQ at 702.552 kb on + strand, within yedQ at 702.553 kb on - strand, within yedQ at 702.554 kb on + strand, within yedQ at 702.555 kb on - strand, within yedQ at 702.555 kb on - strand, within yedQ at 702.721 kb on - strand, within yedQ at 702.725 kb on - strand, within yedQ at 702.878 kb on - strand at 703.172 kb on - strand, within yedP at 703.172 kb on - strand, within yedP at 703.181 kb on - strand, within yedP at 703.181 kb on - strand, within yedP at 703.327 kb on - strand, within yedP at 703.360 kb on - strand, within yedP at 703.371 kb on + strand, within yedP at 703.372 kb on - strand, within yedP at 703.447 kb on + strand, within yedP at 703.557 kb on + strand, within yedP at 703.561 kb on - strand, within yedP at 703.588 kb on + strand, within yedP at 703.589 kb on - strand, within yedP at 703.590 kb on + strand, within yedP at 703.655 kb on - strand, within yedP at 703.772 kb on + strand at 703.773 kb on - strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.776 kb on + strand at 703.777 kb on - strand at 703.777 kb on - strand at 703.854 kb on - strand at 703.891 kb on + strand at 704.001 kb on - strand at 704.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 700,418 + yedI HEPCGN_03975 0.47 -0.3 700,502 + yedI HEPCGN_03975 0.56 +1.2 700,537 + yedI HEPCGN_03975 0.60 +0.4 700,554 + yedI HEPCGN_03975 0.62 +0.0 700,733 - yedI HEPCGN_03975 0.81 -2.8 700,733 - yedI HEPCGN_03975 0.81 -1.4 700,739 + yedI HEPCGN_03975 0.82 +0.0 700,739 + yedI HEPCGN_03975 0.82 -2.3 700,805 - yedI HEPCGN_03975 0.89 +1.1 700,805 - yedI HEPCGN_03975 0.89 -0.1 700,903 - -3.4 700,918 + -0.7 700,918 + +0.6 700,991 + -0.7 701,060 + yodC HEPCGN_03980 0.42 -0.0 701,079 + yodC HEPCGN_03980 0.52 +0.8 701,079 + yodC HEPCGN_03980 0.52 +1.4 701,080 - yodC HEPCGN_03980 0.53 -0.6 701,172 - +0.6 701,242 + -0.8 701,243 - +0.2 701,258 + +0.2 701,265 - -0.6 701,414 - +0.2 701,446 + -2.4 701,489 + +0.7 701,490 - -3.1 701,490 - +0.8 701,490 - -0.6 701,490 - +1.0 701,492 - -0.7 701,507 - yedQ HEPCGN_03985 0.10 +1.4 701,733 + yedQ HEPCGN_03985 0.23 +0.4 701,734 - yedQ HEPCGN_03985 0.23 +1.4 701,734 - yedQ HEPCGN_03985 0.23 +0.2 701,811 - yedQ HEPCGN_03985 0.28 -0.8 701,861 + yedQ HEPCGN_03985 0.31 +0.7 701,862 - yedQ HEPCGN_03985 0.31 -0.1 701,882 + yedQ HEPCGN_03985 0.32 -0.9 701,909 - yedQ HEPCGN_03985 0.34 -0.2 701,920 - yedQ HEPCGN_03985 0.34 +1.1 701,933 + yedQ HEPCGN_03985 0.35 -2.9 701,997 + yedQ HEPCGN_03985 0.39 -0.7 702,074 - yedQ HEPCGN_03985 0.44 +0.3 702,077 - yedQ HEPCGN_03985 0.44 +0.3 702,077 - yedQ HEPCGN_03985 0.44 -0.4 702,086 + yedQ HEPCGN_03985 0.44 -0.3 702,122 - yedQ HEPCGN_03985 0.46 +0.3 702,122 - yedQ HEPCGN_03985 0.46 +1.0 702,171 - yedQ HEPCGN_03985 0.49 -0.8 702,187 + yedQ HEPCGN_03985 0.50 -0.8 702,305 - yedQ HEPCGN_03985 0.57 +0.8 702,317 + yedQ HEPCGN_03985 0.58 +0.8 702,318 - yedQ HEPCGN_03985 0.58 +0.1 702,323 - yedQ HEPCGN_03985 0.58 +0.6 702,375 + yedQ HEPCGN_03985 0.61 -0.8 702,454 - yedQ HEPCGN_03985 0.66 -0.5 702,454 - yedQ HEPCGN_03985 0.66 +1.0 702,497 + yedQ HEPCGN_03985 0.68 -0.4 702,497 + yedQ HEPCGN_03985 0.68 -0.3 702,497 + yedQ HEPCGN_03985 0.68 -0.5 702,497 + yedQ HEPCGN_03985 0.68 -0.4 702,497 + yedQ HEPCGN_03985 0.68 -0.4 702,497 + yedQ HEPCGN_03985 0.68 +0.9 702,498 - yedQ HEPCGN_03985 0.69 -0.2 702,498 - yedQ HEPCGN_03985 0.69 -0.1 702,498 - yedQ HEPCGN_03985 0.69 +1.0 702,552 + yedQ HEPCGN_03985 0.72 +0.4 702,553 - yedQ HEPCGN_03985 0.72 +1.3 702,554 + yedQ HEPCGN_03985 0.72 +1.5 702,555 - yedQ HEPCGN_03985 0.72 +0.5 702,555 - yedQ HEPCGN_03985 0.72 -0.4 702,721 - yedQ HEPCGN_03985 0.82 -0.8 702,725 - yedQ HEPCGN_03985 0.82 -0.4 702,878 - -0.2 703,172 - yedP HEPCGN_03990 0.18 +1.7 703,172 - yedP HEPCGN_03990 0.18 +0.4 703,181 - yedP HEPCGN_03990 0.19 +1.0 703,181 - yedP HEPCGN_03990 0.19 -0.5 703,327 - yedP HEPCGN_03990 0.37 -1.3 703,360 - yedP HEPCGN_03990 0.41 -0.4 703,371 + yedP HEPCGN_03990 0.42 +0.3 703,372 - yedP HEPCGN_03990 0.42 +0.1 703,447 + yedP HEPCGN_03990 0.51 -0.4 703,557 + yedP HEPCGN_03990 0.65 +0.5 703,561 - yedP HEPCGN_03990 0.65 +0.3 703,588 + yedP HEPCGN_03990 0.69 +0.6 703,589 - yedP HEPCGN_03990 0.69 -1.9 703,590 + yedP HEPCGN_03990 0.69 +1.4 703,655 - yedP HEPCGN_03990 0.77 +1.1 703,772 + +0.0 703,773 - +0.1 703,776 + -0.1 703,776 + -0.0 703,776 + +0.8 703,776 + -0.7 703,776 + +0.7 703,776 + +0.1 703,777 - +0.2 703,777 - +1.3 703,854 - +0.1 703,891 + +0.6 704,001 - +0.3 704,030 + +0.4
Or see this region's nucleotide sequence