Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_03900 and zinT are separated by 669 nucleotides zinT and msrQ are separated by 257 nucleotides msrQ and msrP are separated by 0 nucleotides
HEPCGN_03900: HEPCGN_03900 - tRNA-Xxx, at 686,707 to 686,788
_03900
HEPCGN_03905: zinT - metal-binding protein ZinT, at 687,458 to 688,108
zinT
HEPCGN_03910: msrQ - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 688,366 to 689,001
msrQ
HEPCGN_03915: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 689,002 to 690,006
msrP
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 686.486 kb on - strand at 686.505 kb on - strand at 686.642 kb on + strand at 686.679 kb on + strand at 686.680 kb on - strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.958 kb on + strand at 687.278 kb on + strand at 687.278 kb on + strand at 687.298 kb on - strand at 687.436 kb on - strand at 687.853 kb on + strand, within zinT at 687.967 kb on + strand, within zinT at 687.986 kb on - strand, within zinT at 688.094 kb on - strand at 688.127 kb on + strand at 688.128 kb on - strand at 688.203 kb on - strand at 688.203 kb on - strand at 688.436 kb on - strand, within msrQ at 688.466 kb on + strand, within msrQ at 688.648 kb on + strand, within msrQ at 688.666 kb on + strand, within msrQ at 688.678 kb on + strand, within msrQ at 688.679 kb on - strand, within msrQ at 688.682 kb on - strand, within msrQ at 688.756 kb on + strand, within msrQ at 688.822 kb on + strand, within msrQ
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 686,486 - -3.7 686,505 - -1.1 686,642 + -0.6 686,679 + +0.6 686,680 - -0.3 686,847 + -2.4 686,847 + -0.4 686,958 + -2.0 687,278 + -0.1 687,278 + +2.5 687,298 - +0.6 687,436 - +1.0 687,853 + zinT HEPCGN_03905 0.61 +2.3 687,967 + zinT HEPCGN_03905 0.78 +0.7 687,986 - zinT HEPCGN_03905 0.81 -1.9 688,094 - +1.6 688,127 + +0.9 688,128 - -0.5 688,203 - -0.3 688,203 - -0.2 688,436 - msrQ HEPCGN_03910 0.11 +0.5 688,466 + msrQ HEPCGN_03910 0.16 +1.2 688,648 + msrQ HEPCGN_03910 0.44 -0.2 688,666 + msrQ HEPCGN_03910 0.47 +1.9 688,678 + msrQ HEPCGN_03910 0.49 +0.6 688,679 - msrQ HEPCGN_03910 0.49 -0.9 688,682 - msrQ HEPCGN_03910 0.50 +0.3 688,756 + msrQ HEPCGN_03910 0.61 -0.2 688,822 + msrQ HEPCGN_03910 0.72 +0.6
Or see this region's nucleotide sequence