Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artQ and artI are separated by 6 nucleotides artI and artP are separated by 17 nucleotides artP and HEPCGN_02130 are separated by 217 nucleotides
HEPCGN_02115: artQ - arginine ABC transporter permease ArtQ, at 345,952 to 346,668
artQ
HEPCGN_02120: artI - Putative ABC transporter arginine-binding protein 2, at 346,675 to 347,406
artI
HEPCGN_02125: artP - arginine ABC transporter ATP-binding protein ArtP, at 347,424 to 348,152
artP
HEPCGN_02130: HEPCGN_02130 - lipoprotein, at 348,370 to 348,756
_02130
Position (kb) 347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 346.469 kb on + strand, within artQ at 346.473 kb on + strand, within artQ at 346.474 kb on - strand, within artQ at 346.709 kb on + strand at 346.950 kb on - strand, within artI at 346.977 kb on + strand, within artI at 347.054 kb on + strand, within artI at 347.054 kb on + strand, within artI at 347.093 kb on + strand, within artI at 347.096 kb on + strand, within artI at 347.242 kb on - strand, within artI at 347.242 kb on - strand, within artI at 347.340 kb on + strand at 347.423 kb on - strand at 347.426 kb on - strand at 347.493 kb on + strand at 347.494 kb on - strand at 347.499 kb on - strand, within artP at 347.514 kb on - strand, within artP at 347.515 kb on + strand, within artP at 347.515 kb on + strand, within artP at 347.515 kb on + strand, within artP at 347.516 kb on - strand, within artP at 347.516 kb on - strand, within artP at 347.516 kb on - strand, within artP at 347.579 kb on + strand, within artP at 347.580 kb on - strand, within artP at 347.580 kb on - strand, within artP at 347.624 kb on + strand, within artP at 347.667 kb on + strand, within artP at 347.750 kb on + strand, within artP at 347.752 kb on + strand, within artP at 347.823 kb on + strand, within artP at 347.881 kb on + strand, within artP at 348.054 kb on + strand, within artP at 348.054 kb on + strand, within artP at 348.128 kb on + strand at 348.129 kb on - strand at 348.139 kb on - strand at 348.162 kb on + strand at 348.182 kb on + strand at 348.182 kb on + strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.183 kb on - strand at 348.197 kb on + strand at 348.198 kb on - strand at 348.259 kb on + strand at 348.272 kb on + strand at 348.273 kb on - strand at 348.282 kb on + strand at 348.307 kb on + strand at 348.308 kb on - strand at 348.308 kb on - strand at 348.427 kb on + strand, within HEPCGN_02130 at 348.431 kb on + strand, within HEPCGN_02130 at 348.432 kb on - strand, within HEPCGN_02130 at 348.639 kb on + strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.665 kb on - strand, within HEPCGN_02130 at 348.718 kb on - strand at 348.863 kb on - strand at 348.900 kb on + strand at 348.901 kb on - strand at 348.947 kb on + strand at 349.050 kb on - strand at 349.101 kb on - strand at 349.102 kb on + strand at 349.102 kb on + strand at 349.103 kb on - strand at 349.103 kb on - strand at 349.121 kb on + strand at 349.127 kb on - strand at 349.131 kb on - strand at 349.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 346,469 + artQ HEPCGN_02115 0.72 -0.2 346,473 + artQ HEPCGN_02115 0.73 +0.3 346,474 - artQ HEPCGN_02115 0.73 -1.0 346,709 + +0.1 346,950 - artI HEPCGN_02120 0.38 -0.2 346,977 + artI HEPCGN_02120 0.41 +2.5 347,054 + artI HEPCGN_02120 0.52 +0.2 347,054 + artI HEPCGN_02120 0.52 +0.6 347,093 + artI HEPCGN_02120 0.57 +2.3 347,096 + artI HEPCGN_02120 0.58 -0.5 347,242 - artI HEPCGN_02120 0.77 -0.7 347,242 - artI HEPCGN_02120 0.77 -0.4 347,340 + +0.3 347,423 - +0.3 347,426 - +1.1 347,493 + +0.1 347,494 - -0.8 347,499 - artP HEPCGN_02125 0.10 +0.2 347,514 - artP HEPCGN_02125 0.12 -2.9 347,515 + artP HEPCGN_02125 0.12 +0.0 347,515 + artP HEPCGN_02125 0.12 -0.9 347,515 + artP HEPCGN_02125 0.12 +1.6 347,516 - artP HEPCGN_02125 0.13 -0.0 347,516 - artP HEPCGN_02125 0.13 +2.2 347,516 - artP HEPCGN_02125 0.13 +1.1 347,579 + artP HEPCGN_02125 0.21 +0.4 347,580 - artP HEPCGN_02125 0.21 -1.3 347,580 - artP HEPCGN_02125 0.21 -0.0 347,624 + artP HEPCGN_02125 0.27 +0.0 347,667 + artP HEPCGN_02125 0.33 -0.6 347,750 + artP HEPCGN_02125 0.45 +0.4 347,752 + artP HEPCGN_02125 0.45 -0.9 347,823 + artP HEPCGN_02125 0.55 -0.8 347,881 + artP HEPCGN_02125 0.63 +0.7 348,054 + artP HEPCGN_02125 0.86 -0.7 348,054 + artP HEPCGN_02125 0.86 -1.0 348,128 + -0.5 348,129 - +1.6 348,139 - -0.2 348,162 + -0.9 348,182 + +0.6 348,182 + -2.0 348,183 - +0.3 348,183 - +1.2 348,183 - -0.2 348,183 - +0.5 348,183 - -0.1 348,183 - +0.3 348,183 - +0.7 348,183 - +0.4 348,197 + -0.3 348,198 - -1.8 348,259 + -0.2 348,272 + -3.0 348,273 - -0.9 348,282 + -2.9 348,307 + -0.3 348,308 - +0.6 348,308 - -0.5 348,427 + HEPCGN_02130 0.15 +2.5 348,431 + HEPCGN_02130 0.16 -0.8 348,432 - HEPCGN_02130 0.16 +1.0 348,639 + HEPCGN_02130 0.70 -0.1 348,665 - HEPCGN_02130 0.76 -0.2 348,665 - HEPCGN_02130 0.76 -0.5 348,665 - HEPCGN_02130 0.76 -0.2 348,665 - HEPCGN_02130 0.76 -1.8 348,718 - +1.4 348,863 - -1.7 348,900 + -0.5 348,901 - -1.7 348,947 + -0.2 349,050 - -1.3 349,101 - +2.2 349,102 + -0.4 349,102 + +0.2 349,103 - -0.8 349,103 - -2.2 349,121 + -0.2 349,127 - +1.0 349,131 - -0.4 349,136 - -0.3
Or see this region's nucleotide sequence