Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yciQ and rluB are separated by 210 nucleotides rluB and HEPCGN_25565 are separated by 169 nucleotides
HEPCGN_25555: yciQ - Uncharacterized protein YciQ, at 3,847,265 to 3,849,154
yciQ
HEPCGN_25560: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 3,849,365 to 3,850,240
rluB
HEPCGN_25565: HEPCGN_25565 - Putative lipoprotein, at 3,850,410 to 3,851,321
_25565
Position (kb) 3849
3850
3851 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3848.453 kb on - strand, within yciQ at 3848.549 kb on - strand, within yciQ at 3848.549 kb on - strand, within yciQ at 3848.549 kb on - strand, within yciQ at 3848.554 kb on + strand, within yciQ at 3848.557 kb on + strand, within yciQ at 3848.699 kb on + strand, within yciQ at 3848.719 kb on - strand, within yciQ at 3848.732 kb on + strand, within yciQ at 3848.734 kb on + strand, within yciQ at 3848.734 kb on + strand, within yciQ at 3848.735 kb on - strand, within yciQ at 3848.795 kb on - strand, within yciQ at 3848.852 kb on - strand, within yciQ at 3849.055 kb on - strand at 3849.080 kb on + strand at 3849.080 kb on + strand at 3849.105 kb on - strand at 3849.195 kb on + strand at 3849.195 kb on + strand at 3849.195 kb on + strand at 3849.200 kb on + strand at 3849.200 kb on + strand at 3849.201 kb on - strand at 3849.201 kb on - strand at 3849.204 kb on - strand at 3849.277 kb on - strand at 3849.364 kb on + strand at 3849.379 kb on - strand at 3849.430 kb on + strand at 3849.430 kb on + strand at 3849.430 kb on + strand at 3849.434 kb on - strand at 3849.578 kb on + strand, within rluB at 3849.581 kb on + strand, within rluB at 3849.582 kb on - strand, within rluB at 3849.697 kb on + strand, within rluB at 3849.701 kb on - strand, within rluB at 3849.701 kb on - strand, within rluB at 3849.701 kb on - strand, within rluB at 3849.795 kb on + strand, within rluB at 3849.796 kb on - strand, within rluB at 3850.075 kb on + strand, within rluB at 3850.080 kb on - strand, within rluB at 3850.372 kb on + strand at 3850.422 kb on - strand at 3851.003 kb on + strand, within HEPCGN_25565
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,848,453 - yciQ HEPCGN_25555 0.63 +1.3 3,848,549 - yciQ HEPCGN_25555 0.68 -1.7 3,848,549 - yciQ HEPCGN_25555 0.68 +1.2 3,848,549 - yciQ HEPCGN_25555 0.68 +0.3 3,848,554 + yciQ HEPCGN_25555 0.68 -0.5 3,848,557 + yciQ HEPCGN_25555 0.68 -1.0 3,848,699 + yciQ HEPCGN_25555 0.76 -0.3 3,848,719 - yciQ HEPCGN_25555 0.77 +0.5 3,848,732 + yciQ HEPCGN_25555 0.78 +0.0 3,848,734 + yciQ HEPCGN_25555 0.78 -0.0 3,848,734 + yciQ HEPCGN_25555 0.78 -0.4 3,848,735 - yciQ HEPCGN_25555 0.78 -0.4 3,848,795 - yciQ HEPCGN_25555 0.81 +0.7 3,848,852 - yciQ HEPCGN_25555 0.84 -0.2 3,849,055 - +0.3 3,849,080 + -0.6 3,849,080 + +0.9 3,849,105 - -0.9 3,849,195 + +0.4 3,849,195 + -0.0 3,849,195 + +0.5 3,849,200 + +1.0 3,849,200 + -1.2 3,849,201 - +1.2 3,849,201 - +0.6 3,849,204 - -0.9 3,849,277 - -1.2 3,849,364 + +0.9 3,849,379 - -0.1 3,849,430 + -0.2 3,849,430 + -2.5 3,849,430 + +0.7 3,849,434 - -0.0 3,849,578 + rluB HEPCGN_25560 0.24 -0.8 3,849,581 + rluB HEPCGN_25560 0.25 -0.3 3,849,582 - rluB HEPCGN_25560 0.25 +0.1 3,849,697 + rluB HEPCGN_25560 0.38 -0.3 3,849,701 - rluB HEPCGN_25560 0.38 -0.4 3,849,701 - rluB HEPCGN_25560 0.38 +0.8 3,849,701 - rluB HEPCGN_25560 0.38 +1.0 3,849,795 + rluB HEPCGN_25560 0.49 -0.3 3,849,796 - rluB HEPCGN_25560 0.49 -0.2 3,850,075 + rluB HEPCGN_25560 0.81 -0.6 3,850,080 - rluB HEPCGN_25560 0.82 -2.0 3,850,372 + +0.2 3,850,422 - -3.2 3,851,003 + HEPCGN_25565 0.65 +0.6
Or see this region's nucleotide sequence