Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23045

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_23040 and ycaL are separated by 206 nucleotidesycaL and cmk are separated by 172 nucleotidescmk and rpsA are separated by 110 nucleotides HEPCGN_23040: HEPCGN_23040 - IS4-like element IS4 family transposase, at 3,393,783 to 3,395,111 _23040 HEPCGN_23045: ycaL - metallopeptidase YcaL, at 3,395,318 to 3,396,082 ycaL HEPCGN_23050: cmk - (d)CMP kinase, at 3,396,255 to 3,396,938 cmk HEPCGN_23055: rpsA - 30S ribosomal protein S1, at 3,397,049 to 3,398,722 rpsA Position (kb) 3395 3396 3397Strain fitness (log2 ratio) -1 0 1at 3395.250 kb on - strandat 3395.278 kb on + strandat 3395.278 kb on + strandat 3395.326 kb on + strandat 3395.393 kb on - strandat 3395.399 kb on - strand, within ycaLat 3395.404 kb on + strand, within ycaLat 3395.424 kb on + strand, within ycaLat 3395.425 kb on - strand, within ycaLat 3395.432 kb on + strand, within ycaLat 3395.435 kb on - strand, within ycaLat 3395.435 kb on - strand, within ycaLat 3395.435 kb on - strand, within ycaLat 3395.522 kb on - strand, within ycaLat 3395.601 kb on - strand, within ycaLat 3395.601 kb on - strand, within ycaLat 3395.602 kb on + strand, within ycaLat 3395.609 kb on + strand, within ycaLat 3395.609 kb on + strand, within ycaLat 3395.610 kb on - strand, within ycaLat 3395.610 kb on - strand, within ycaLat 3395.610 kb on - strand, within ycaLat 3395.612 kb on - strand, within ycaLat 3395.664 kb on - strand, within ycaLat 3395.844 kb on + strand, within ycaLat 3395.845 kb on - strand, within ycaLat 3395.879 kb on + strand, within ycaLat 3396.077 kb on - strandat 3396.077 kb on - strandat 3396.080 kb on + strandat 3396.080 kb on + strandat 3396.080 kb on + strandat 3396.152 kb on - strandat 3396.207 kb on + strandat 3396.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,395,250 - +0.8
3,395,278 + -0.0
3,395,278 + -0.2
3,395,326 + +0.3
3,395,393 - -0.3
3,395,399 - ycaL HEPCGN_23045 0.11 +0.2
3,395,404 + ycaL HEPCGN_23045 0.11 -0.4
3,395,424 + ycaL HEPCGN_23045 0.14 +0.5
3,395,425 - ycaL HEPCGN_23045 0.14 +0.5
3,395,432 + ycaL HEPCGN_23045 0.15 +0.3
3,395,435 - ycaL HEPCGN_23045 0.15 +0.3
3,395,435 - ycaL HEPCGN_23045 0.15 +0.2
3,395,435 - ycaL HEPCGN_23045 0.15 -0.1
3,395,522 - ycaL HEPCGN_23045 0.27 -0.0
3,395,601 - ycaL HEPCGN_23045 0.37 +0.5
3,395,601 - ycaL HEPCGN_23045 0.37 +0.0
3,395,602 + ycaL HEPCGN_23045 0.37 +1.3
3,395,609 + ycaL HEPCGN_23045 0.38 +0.6
3,395,609 + ycaL HEPCGN_23045 0.38 -0.5
3,395,610 - ycaL HEPCGN_23045 0.38 -0.5
3,395,610 - ycaL HEPCGN_23045 0.38 -0.4
3,395,610 - ycaL HEPCGN_23045 0.38 -0.2
3,395,612 - ycaL HEPCGN_23045 0.38 +0.1
3,395,664 - ycaL HEPCGN_23045 0.45 -0.7
3,395,844 + ycaL HEPCGN_23045 0.69 +1.4
3,395,845 - ycaL HEPCGN_23045 0.69 -0.0
3,395,879 + ycaL HEPCGN_23045 0.73 +0.6
3,396,077 - -0.3
3,396,077 - -0.8
3,396,080 + +0.1
3,396,080 + +0.2
3,396,080 + -0.0
3,396,152 - +0.8
3,396,207 + -0.7
3,396,242 + -1.3

Or see this region's nucleotide sequence