Strain Fitness in Escherichia coli ECOR38 around HEPCGN_17970

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_17965 and HEPCGN_17970 overlap by 1 nucleotidesHEPCGN_17970 and wcaG are separated by 31 nucleotideswcaG and HEPCGN_17980 overlap by 4 nucleotides HEPCGN_17965: HEPCGN_17965 - 8-amino-7-oxononanoate synthase, at 2,336,414 to 2,337,586 _17965 HEPCGN_17970: HEPCGN_17970 - phosphopantetheine attachment site family protein, at 2,337,586 to 2,337,834 _17970 HEPCGN_17975: wcaG - short-chain dehydrogenase, at 2,337,866 to 2,338,780 wcaG HEPCGN_17980: HEPCGN_17980 - AMP-binding protein, at 2,338,777 to 2,340,498 _17980 Position (kb) 2337 2338Strain fitness (log2 ratio) -2 -1 0 1at 2336.603 kb on + strand, within HEPCGN_17965at 2336.623 kb on + strand, within HEPCGN_17965at 2336.623 kb on + strand, within HEPCGN_17965at 2336.623 kb on + strand, within HEPCGN_17965at 2336.623 kb on + strand, within HEPCGN_17965at 2336.624 kb on - strand, within HEPCGN_17965at 2336.633 kb on + strand, within HEPCGN_17965at 2336.633 kb on + strand, within HEPCGN_17965at 2336.634 kb on - strand, within HEPCGN_17965at 2336.780 kb on - strand, within HEPCGN_17965at 2336.876 kb on - strand, within HEPCGN_17965at 2336.876 kb on - strand, within HEPCGN_17965at 2336.876 kb on - strand, within HEPCGN_17965at 2336.876 kb on - strand, within HEPCGN_17965at 2336.992 kb on + strand, within HEPCGN_17965at 2337.036 kb on + strand, within HEPCGN_17965at 2337.036 kb on + strand, within HEPCGN_17965at 2337.036 kb on + strand, within HEPCGN_17965at 2337.037 kb on - strand, within HEPCGN_17965at 2337.037 kb on - strand, within HEPCGN_17965at 2337.037 kb on - strand, within HEPCGN_17965at 2337.056 kb on - strand, within HEPCGN_17965at 2337.110 kb on - strand, within HEPCGN_17965at 2337.165 kb on + strand, within HEPCGN_17965at 2337.169 kb on + strand, within HEPCGN_17965at 2337.195 kb on - strand, within HEPCGN_17965at 2337.236 kb on + strand, within HEPCGN_17965at 2337.413 kb on - strand, within HEPCGN_17965at 2337.434 kb on - strand, within HEPCGN_17965at 2337.490 kb on - strandat 2337.502 kb on + strandat 2337.567 kb on + strandat 2337.572 kb on - strandat 2337.579 kb on - strandat 2337.587 kb on + strandat 2337.658 kb on - strand, within HEPCGN_17970at 2337.697 kb on + strand, within HEPCGN_17970at 2337.807 kb on - strand, within HEPCGN_17970at 2337.814 kb on + strandat 2337.829 kb on + strandat 2337.835 kb on - strandat 2337.843 kb on + strandat 2337.902 kb on - strandat 2337.935 kb on - strandat 2337.943 kb on + strandat 2338.165 kb on - strand, within wcaGat 2338.308 kb on - strand, within wcaGat 2338.329 kb on + strand, within wcaGat 2338.360 kb on + strand, within wcaGat 2338.456 kb on + strand, within wcaGat 2338.621 kb on + strand, within wcaGat 2338.622 kb on - strand, within wcaGat 2338.655 kb on - strand, within wcaGat 2338.731 kb on + strandat 2338.732 kb on - strandat 2338.732 kb on - strandat 2338.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,336,603 + HEPCGN_17965 0.16 -0.3
2,336,623 + HEPCGN_17965 0.18 +0.6
2,336,623 + HEPCGN_17965 0.18 -0.0
2,336,623 + HEPCGN_17965 0.18 -0.1
2,336,623 + HEPCGN_17965 0.18 +0.2
2,336,624 - HEPCGN_17965 0.18 +0.0
2,336,633 + HEPCGN_17965 0.19 -0.1
2,336,633 + HEPCGN_17965 0.19 -1.1
2,336,634 - HEPCGN_17965 0.19 +0.3
2,336,780 - HEPCGN_17965 0.31 +0.1
2,336,876 - HEPCGN_17965 0.39 +0.8
2,336,876 - HEPCGN_17965 0.39 -0.0
2,336,876 - HEPCGN_17965 0.39 +1.1
2,336,876 - HEPCGN_17965 0.39 -0.2
2,336,992 + HEPCGN_17965 0.49 -0.7
2,337,036 + HEPCGN_17965 0.53 +0.5
2,337,036 + HEPCGN_17965 0.53 +0.0
2,337,036 + HEPCGN_17965 0.53 -0.1
2,337,037 - HEPCGN_17965 0.53 +0.6
2,337,037 - HEPCGN_17965 0.53 +0.5
2,337,037 - HEPCGN_17965 0.53 +0.4
2,337,056 - HEPCGN_17965 0.55 -0.7
2,337,110 - HEPCGN_17965 0.59 +0.4
2,337,165 + HEPCGN_17965 0.64 -0.1
2,337,169 + HEPCGN_17965 0.64 +0.9
2,337,195 - HEPCGN_17965 0.67 +0.1
2,337,236 + HEPCGN_17965 0.70 -0.6
2,337,413 - HEPCGN_17965 0.85 +1.2
2,337,434 - HEPCGN_17965 0.87 +0.5
2,337,490 - +0.6
2,337,502 + -0.2
2,337,567 + -0.1
2,337,572 - +0.6
2,337,579 - -0.1
2,337,587 + +0.3
2,337,658 - HEPCGN_17970 0.29 +0.8
2,337,697 + HEPCGN_17970 0.45 +1.0
2,337,807 - HEPCGN_17970 0.89 -0.1
2,337,814 + -1.2
2,337,829 + -0.4
2,337,835 - +0.1
2,337,843 + +1.6
2,337,902 - -1.7
2,337,935 - -0.1
2,337,943 + +0.1
2,338,165 - wcaG HEPCGN_17975 0.33 -0.4
2,338,308 - wcaG HEPCGN_17975 0.48 -0.2
2,338,329 + wcaG HEPCGN_17975 0.51 -0.2
2,338,360 + wcaG HEPCGN_17975 0.54 +0.4
2,338,456 + wcaG HEPCGN_17975 0.64 -0.4
2,338,621 + wcaG HEPCGN_17975 0.83 -1.2
2,338,622 - wcaG HEPCGN_17975 0.83 -1.0
2,338,655 - wcaG HEPCGN_17975 0.86 +0.5
2,338,731 + -2.0
2,338,732 - -1.8
2,338,732 - +0.8
2,338,814 + +0.1

Or see this region's nucleotide sequence