Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10705

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_10700 and HEPCGN_10705 are separated by 49 nucleotidesHEPCGN_10705 and HEPCGN_10710 are separated by 11 nucleotides HEPCGN_10700: HEPCGN_10700 - lactate permease, at 878,960 to 880,516 _10700 HEPCGN_10705: HEPCGN_10705 - Cysteine-rich domain-containing protein, at 880,566 to 881,285 _10705 HEPCGN_10710: HEPCGN_10710 - LutB/LldF family L-lactate oxidation iron-sulfur protein, at 881,297 to 882,712 _10710 Position (kb) 880 881 882Strain fitness (log2 ratio) -2 -1 0 1 2 3at 879.589 kb on - strand, within HEPCGN_10700at 879.607 kb on + strand, within HEPCGN_10700at 879.637 kb on - strand, within HEPCGN_10700at 879.715 kb on - strand, within HEPCGN_10700at 879.764 kb on - strand, within HEPCGN_10700at 879.816 kb on + strand, within HEPCGN_10700at 879.836 kb on + strand, within HEPCGN_10700at 879.836 kb on + strand, within HEPCGN_10700at 879.837 kb on - strand, within HEPCGN_10700at 879.888 kb on + strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.051 kb on - strand, within HEPCGN_10700at 880.071 kb on + strand, within HEPCGN_10700at 880.093 kb on + strand, within HEPCGN_10700at 880.093 kb on + strand, within HEPCGN_10700at 880.250 kb on - strand, within HEPCGN_10700at 880.385 kb on - strandat 880.425 kb on + strandat 880.425 kb on + strandat 880.425 kb on + strandat 880.449 kb on - strandat 880.460 kb on + strandat 880.460 kb on + strandat 880.461 kb on - strandat 880.462 kb on + strandat 880.469 kb on - strandat 880.469 kb on - strandat 880.474 kb on - strandat 880.486 kb on - strandat 880.496 kb on + strandat 880.575 kb on - strandat 880.607 kb on + strandat 880.608 kb on - strandat 880.639 kb on + strand, within HEPCGN_10705at 880.753 kb on + strand, within HEPCGN_10705at 880.810 kb on - strand, within HEPCGN_10705at 880.810 kb on - strand, within HEPCGN_10705at 880.824 kb on + strand, within HEPCGN_10705at 880.913 kb on + strand, within HEPCGN_10705at 880.950 kb on - strand, within HEPCGN_10705at 880.965 kb on + strand, within HEPCGN_10705at 880.966 kb on - strand, within HEPCGN_10705at 880.966 kb on - strand, within HEPCGN_10705at 881.153 kb on + strand, within HEPCGN_10705at 881.154 kb on - strand, within HEPCGN_10705at 881.154 kb on - strand, within HEPCGN_10705at 881.156 kb on + strand, within HEPCGN_10705at 881.165 kb on + strand, within HEPCGN_10705at 881.166 kb on - strand, within HEPCGN_10705at 881.246 kb on - strandat 881.259 kb on - strandat 881.318 kb on - strandat 881.327 kb on - strandat 881.404 kb on + strandat 881.501 kb on + strand, within HEPCGN_10710at 881.502 kb on - strand, within HEPCGN_10710at 881.502 kb on - strand, within HEPCGN_10710at 881.507 kb on + strand, within HEPCGN_10710at 881.508 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.515 kb on - strand, within HEPCGN_10710at 881.550 kb on - strand, within HEPCGN_10710at 881.582 kb on + strand, within HEPCGN_10710at 881.583 kb on - strand, within HEPCGN_10710at 881.586 kb on + strand, within HEPCGN_10710at 881.587 kb on - strand, within HEPCGN_10710at 881.718 kb on - strand, within HEPCGN_10710at 881.720 kb on - strand, within HEPCGN_10710at 881.774 kb on - strand, within HEPCGN_10710at 881.914 kb on + strand, within HEPCGN_10710at 881.966 kb on - strand, within HEPCGN_10710at 881.974 kb on + strand, within HEPCGN_10710at 881.986 kb on + strand, within HEPCGN_10710at 881.986 kb on + strand, within HEPCGN_10710at 881.987 kb on - strand, within HEPCGN_10710at 881.987 kb on - strand, within HEPCGN_10710at 881.987 kb on - strand, within HEPCGN_10710at 881.993 kb on - strand, within HEPCGN_10710at 882.002 kb on - strand, within HEPCGN_10710at 882.059 kb on - strand, within HEPCGN_10710at 882.105 kb on - strand, within HEPCGN_10710at 882.256 kb on + strand, within HEPCGN_10710at 882.257 kb on - strand, within HEPCGN_10710

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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879,589 - HEPCGN_10700 0.40 +0.2
879,607 + HEPCGN_10700 0.42 -0.1
879,637 - HEPCGN_10700 0.43 -0.4
879,715 - HEPCGN_10700 0.48 +1.3
879,764 - HEPCGN_10700 0.52 -0.1
879,816 + HEPCGN_10700 0.55 +0.3
879,836 + HEPCGN_10700 0.56 -0.3
879,836 + HEPCGN_10700 0.56 +0.6
879,837 - HEPCGN_10700 0.56 +0.1
879,888 + HEPCGN_10700 0.60 +0.3
880,051 - HEPCGN_10700 0.70 -0.4
880,051 - HEPCGN_10700 0.70 +0.6
880,051 - HEPCGN_10700 0.70 +0.1
880,051 - HEPCGN_10700 0.70 +0.1
880,051 - HEPCGN_10700 0.70 +0.9
880,071 + HEPCGN_10700 0.71 +0.5
880,093 + HEPCGN_10700 0.73 +3.0
880,093 + HEPCGN_10700 0.73 -0.4
880,250 - HEPCGN_10700 0.83 +0.1
880,385 - +0.0
880,425 + +1.0
880,425 + +0.2
880,425 + +0.3
880,449 - -0.1
880,460 + -0.3
880,460 + +0.6
880,461 - +0.5
880,462 + +0.6
880,469 - -1.0
880,469 - +0.4
880,474 - +0.2
880,486 - -1.0
880,496 + +0.4
880,575 - +0.1
880,607 + +0.2
880,608 - -0.1
880,639 + HEPCGN_10705 0.10 +0.7
880,753 + HEPCGN_10705 0.26 +0.2
880,810 - HEPCGN_10705 0.34 -0.8
880,810 - HEPCGN_10705 0.34 +0.5
880,824 + HEPCGN_10705 0.36 -0.5
880,913 + HEPCGN_10705 0.48 -1.7
880,950 - HEPCGN_10705 0.53 -1.3
880,965 + HEPCGN_10705 0.55 -0.0
880,966 - HEPCGN_10705 0.56 +0.7
880,966 - HEPCGN_10705 0.56 -0.2
881,153 + HEPCGN_10705 0.82 -1.4
881,154 - HEPCGN_10705 0.82 -0.5
881,154 - HEPCGN_10705 0.82 -0.0
881,156 + HEPCGN_10705 0.82 -0.1
881,165 + HEPCGN_10705 0.83 +0.3
881,166 - HEPCGN_10705 0.83 +0.0
881,246 - -0.9
881,259 - -0.0
881,318 - -0.5
881,327 - -1.0
881,404 + +1.4
881,501 + HEPCGN_10710 0.14 +0.1
881,502 - HEPCGN_10710 0.14 +0.6
881,502 - HEPCGN_10710 0.14 -0.7
881,507 + HEPCGN_10710 0.15 -0.6
881,508 - HEPCGN_10710 0.15 +0.1
881,515 - HEPCGN_10710 0.15 -0.4
881,515 - HEPCGN_10710 0.15 +0.3
881,515 - HEPCGN_10710 0.15 -0.9
881,515 - HEPCGN_10710 0.15 -0.8
881,550 - HEPCGN_10710 0.18 +0.7
881,582 + HEPCGN_10710 0.20 -1.7
881,583 - HEPCGN_10710 0.20 +0.3
881,586 + HEPCGN_10710 0.20 +0.2
881,587 - HEPCGN_10710 0.20 +0.3
881,718 - HEPCGN_10710 0.30 +0.3
881,720 - HEPCGN_10710 0.30 +0.3
881,774 - HEPCGN_10710 0.34 +0.1
881,914 + HEPCGN_10710 0.44 +0.8
881,966 - HEPCGN_10710 0.47 +0.7
881,974 + HEPCGN_10710 0.48 +0.0
881,986 + HEPCGN_10710 0.49 +1.4
881,986 + HEPCGN_10710 0.49 +0.4
881,987 - HEPCGN_10710 0.49 -0.2
881,987 - HEPCGN_10710 0.49 +0.2
881,987 - HEPCGN_10710 0.49 -0.3
881,993 - HEPCGN_10710 0.49 -0.2
882,002 - HEPCGN_10710 0.50 +0.6
882,059 - HEPCGN_10710 0.54 +0.1
882,105 - HEPCGN_10710 0.57 -1.2
882,256 + HEPCGN_10710 0.68 +0.2
882,257 - HEPCGN_10710 0.68 -1.8

Or see this region's nucleotide sequence