Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt creC and creB overlap by 1 nucleotides creB and creA are separated by 12 nucleotides creA and robA are separated by 210 nucleotides
HEPCGN_09140: creC - two-component system sensor histidine kinase CreC, at 576,155 to 577,579
creC
HEPCGN_09145: creB - two-component system response regulator CreB, at 577,579 to 578,268
creB
HEPCGN_09150: creA - protein CreA, at 578,281 to 578,754
creA
HEPCGN_09155: robA - MDR efflux pump AcrAB transcriptional activator RobA, at 578,965 to 579,834
robA
Position (kb) 577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 576.581 kb on + strand, within creC at 576.647 kb on + strand, within creC at 576.792 kb on - strand, within creC at 576.792 kb on - strand, within creC at 576.805 kb on - strand, within creC at 576.814 kb on + strand, within creC at 576.814 kb on + strand, within creC at 576.814 kb on + strand, within creC at 576.815 kb on - strand, within creC at 576.815 kb on - strand, within creC at 576.816 kb on + strand, within creC at 576.816 kb on + strand, within creC at 576.816 kb on + strand, within creC at 576.817 kb on - strand, within creC at 576.844 kb on + strand, within creC at 576.845 kb on - strand, within creC at 576.845 kb on - strand, within creC at 576.884 kb on - strand, within creC at 576.911 kb on - strand, within creC at 576.933 kb on + strand, within creC at 576.934 kb on - strand, within creC at 577.042 kb on + strand, within creC at 577.043 kb on - strand, within creC at 577.048 kb on + strand, within creC at 577.083 kb on - strand, within creC at 577.099 kb on + strand, within creC at 577.134 kb on + strand, within creC at 577.134 kb on + strand, within creC at 577.135 kb on - strand, within creC at 577.269 kb on - strand, within creC at 577.291 kb on + strand, within creC at 577.293 kb on + strand, within creC at 577.293 kb on + strand, within creC at 577.293 kb on + strand, within creC at 577.293 kb on + strand, within creC at 577.293 kb on + strand, within creC at 577.303 kb on - strand, within creC at 577.489 kb on + strand at 577.515 kb on - strand at 577.598 kb on + strand at 577.617 kb on + strand at 577.617 kb on + strand at 577.671 kb on + strand, within creB at 577.697 kb on + strand, within creB at 577.960 kb on - strand, within creB at 577.968 kb on - strand, within creB at 578.036 kb on - strand, within creB at 578.390 kb on + strand, within creA at 578.416 kb on - strand, within creA at 578.443 kb on + strand, within creA at 578.444 kb on - strand, within creA at 578.447 kb on - strand, within creA at 578.447 kb on - strand, within creA at 578.532 kb on + strand, within creA at 578.589 kb on - strand, within creA at 578.725 kb on + strand at 578.748 kb on - strand at 578.760 kb on + strand at 578.801 kb on + strand at 578.801 kb on + strand at 578.810 kb on + strand at 578.840 kb on + strand at 578.911 kb on - strand at 578.959 kb on + strand at 578.965 kb on - strand at 579.044 kb on + strand at 579.112 kb on - strand, within robA at 579.121 kb on + strand, within robA at 579.124 kb on - strand, within robA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 576,581 + creC HEPCGN_09140 0.30 -0.1 576,647 + creC HEPCGN_09140 0.35 +0.1 576,792 - creC HEPCGN_09140 0.45 -2.4 576,792 - creC HEPCGN_09140 0.45 +0.8 576,805 - creC HEPCGN_09140 0.46 +0.0 576,814 + creC HEPCGN_09140 0.46 -1.4 576,814 + creC HEPCGN_09140 0.46 -1.3 576,814 + creC HEPCGN_09140 0.46 -0.6 576,815 - creC HEPCGN_09140 0.46 +0.1 576,815 - creC HEPCGN_09140 0.46 -1.4 576,816 + creC HEPCGN_09140 0.46 +0.1 576,816 + creC HEPCGN_09140 0.46 -0.3 576,816 + creC HEPCGN_09140 0.46 +0.3 576,817 - creC HEPCGN_09140 0.46 -0.6 576,844 + creC HEPCGN_09140 0.48 +0.5 576,845 - creC HEPCGN_09140 0.48 +1.1 576,845 - creC HEPCGN_09140 0.48 -0.4 576,884 - creC HEPCGN_09140 0.51 +0.2 576,911 - creC HEPCGN_09140 0.53 +0.9 576,933 + creC HEPCGN_09140 0.55 -0.2 576,934 - creC HEPCGN_09140 0.55 -0.2 577,042 + creC HEPCGN_09140 0.62 +0.2 577,043 - creC HEPCGN_09140 0.62 -0.0 577,048 + creC HEPCGN_09140 0.63 +0.2 577,083 - creC HEPCGN_09140 0.65 +0.2 577,099 + creC HEPCGN_09140 0.66 +0.1 577,134 + creC HEPCGN_09140 0.69 +0.4 577,134 + creC HEPCGN_09140 0.69 +0.5 577,135 - creC HEPCGN_09140 0.69 +0.1 577,269 - creC HEPCGN_09140 0.78 +0.5 577,291 + creC HEPCGN_09140 0.80 -0.5 577,293 + creC HEPCGN_09140 0.80 -0.1 577,293 + creC HEPCGN_09140 0.80 -0.8 577,293 + creC HEPCGN_09140 0.80 -3.1 577,293 + creC HEPCGN_09140 0.80 -2.2 577,293 + creC HEPCGN_09140 0.80 -0.1 577,303 - creC HEPCGN_09140 0.81 +0.4 577,489 + +0.2 577,515 - +0.2 577,598 + -0.1 577,617 + +0.1 577,617 + +0.4 577,671 + creB HEPCGN_09145 0.13 -2.0 577,697 + creB HEPCGN_09145 0.17 -0.1 577,960 - creB HEPCGN_09145 0.55 +0.1 577,968 - creB HEPCGN_09145 0.56 +0.3 578,036 - creB HEPCGN_09145 0.66 -0.9 578,390 + creA HEPCGN_09150 0.23 +1.2 578,416 - creA HEPCGN_09150 0.28 +0.9 578,443 + creA HEPCGN_09150 0.34 +0.1 578,444 - creA HEPCGN_09150 0.34 +0.7 578,447 - creA HEPCGN_09150 0.35 +0.4 578,447 - creA HEPCGN_09150 0.35 -0.2 578,532 + creA HEPCGN_09150 0.53 -1.9 578,589 - creA HEPCGN_09150 0.65 -0.6 578,725 + +0.3 578,748 - -0.3 578,760 + +0.3 578,801 + +1.0 578,801 + -0.3 578,810 + +0.7 578,840 + +0.6 578,911 - +0.3 578,959 + +0.3 578,965 - +0.1 579,044 + -0.0 579,112 - robA HEPCGN_09155 0.17 +0.2 579,121 + robA HEPCGN_09155 0.18 +0.1 579,124 - robA HEPCGN_09155 0.18 +0.2
Or see this region's nucleotide sequence