Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrC and thrB are separated by 0 nucleotides thrB and thrA are separated by 1 nucleotides thrA and HEPCGN_09120 are separated by 80 nucleotides HEPCGN_09120 and lasT are separated by 213 nucleotides
HEPCGN_09105: thrC - threonine synthase, at 567,604 to 568,890
thrC
HEPCGN_09110: thrB - homoserine kinase, at 568,891 to 569,823
thrB
HEPCGN_09115: thrA - bifunctional aspartate kinase/homoserine dehydrogenase I, at 569,825 to 572,287
thrA
HEPCGN_09120: HEPCGN_09120 - thr operon leader peptide, at 572,368 to 572,433
_09120
HEPCGN_09125: lasT - tRNA/rRNA methyltransferase, at 572,647 to 573,333
lasT
Position (kb) 569
570
571
572
573 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 568.881 kb on - strand at 568.892 kb on + strand at 568.893 kb on - strand at 568.936 kb on - strand at 568.964 kb on + strand at 568.964 kb on + strand at 568.964 kb on + strand at 568.964 kb on + strand at 568.965 kb on - strand at 568.972 kb on - strand at 569.284 kb on - strand, within thrB at 569.373 kb on + strand, within thrB at 569.374 kb on - strand, within thrB at 569.374 kb on - strand, within thrB at 569.556 kb on + strand, within thrB at 569.557 kb on - strand, within thrB at 569.720 kb on - strand, within thrB at 569.810 kb on + strand at 569.852 kb on - strand at 569.885 kb on - strand at 569.934 kb on + strand at 569.934 kb on + strand at 569.946 kb on + strand at 569.947 kb on - strand at 569.947 kb on - strand at 570.134 kb on - strand, within thrA at 570.244 kb on + strand, within thrA at 570.361 kb on + strand, within thrA at 570.362 kb on - strand, within thrA at 570.475 kb on - strand, within thrA at 570.522 kb on + strand, within thrA at 570.523 kb on - strand, within thrA at 570.562 kb on + strand, within thrA at 570.677 kb on + strand, within thrA at 570.749 kb on + strand, within thrA at 570.749 kb on + strand, within thrA at 570.749 kb on + strand, within thrA at 570.750 kb on - strand, within thrA at 570.750 kb on - strand, within thrA at 570.775 kb on + strand, within thrA at 570.795 kb on - strand, within thrA at 570.795 kb on - strand, within thrA at 570.802 kb on + strand, within thrA at 571.148 kb on + strand, within thrA at 571.148 kb on + strand, within thrA at 571.149 kb on - strand, within thrA at 571.152 kb on + strand, within thrA at 571.152 kb on + strand, within thrA at 571.152 kb on + strand, within thrA at 571.152 kb on + strand, within thrA at 571.221 kb on + strand, within thrA at 571.222 kb on - strand, within thrA at 571.348 kb on + strand, within thrA at 571.348 kb on + strand, within thrA at 571.376 kb on + strand, within thrA at 571.411 kb on + strand, within thrA at 571.412 kb on - strand, within thrA at 571.478 kb on - strand, within thrA at 571.512 kb on + strand, within thrA at 571.537 kb on - strand, within thrA at 571.537 kb on - strand, within thrA at 571.589 kb on - strand, within thrA at 571.590 kb on + strand, within thrA at 571.590 kb on + strand, within thrA at 571.590 kb on + strand, within thrA at 571.591 kb on - strand, within thrA at 571.591 kb on - strand, within thrA at 571.663 kb on - strand, within thrA at 571.799 kb on - strand, within thrA at 571.853 kb on - strand, within thrA at 571.888 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.963 kb on + strand, within thrA at 571.964 kb on - strand, within thrA at 571.985 kb on + strand, within thrA at 571.985 kb on + strand, within thrA at 571.986 kb on - strand, within thrA at 572.263 kb on + strand at 572.264 kb on - strand at 572.294 kb on + strand at 572.294 kb on + strand at 572.382 kb on + strand, within HEPCGN_09120 at 572.410 kb on - strand, within HEPCGN_09120 at 572.422 kb on - strand, within HEPCGN_09120 at 572.422 kb on - strand, within HEPCGN_09120 at 572.473 kb on + strand at 572.479 kb on + strand at 572.479 kb on + strand at 572.480 kb on - strand at 572.482 kb on - strand at 572.497 kb on + strand at 572.505 kb on + strand at 572.526 kb on + strand at 572.593 kb on + strand at 572.593 kb on + strand at 572.594 kb on - strand at 572.594 kb on - strand at 572.594 kb on - strand at 572.634 kb on - strand at 572.671 kb on - strand at 572.671 kb on - strand at 572.713 kb on + strand at 572.858 kb on - strand, within lasT at 572.869 kb on + strand, within lasT at 572.882 kb on + strand, within lasT at 572.883 kb on - strand, within lasT at 572.883 kb on - strand, within lasT at 572.943 kb on + strand, within lasT at 572.962 kb on + strand, within lasT at 573.081 kb on - strand, within lasT at 573.081 kb on - strand, within lasT
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 568,881 - -3.6 568,892 + -2.9 568,893 - -2.2 568,936 - -1.6 568,964 + -3.1 568,964 + -2.2 568,964 + -4.7 568,964 + -1.4 568,965 - -3.1 568,972 - -2.0 569,284 - thrB HEPCGN_09110 0.42 -2.7 569,373 + thrB HEPCGN_09110 0.52 -2.4 569,374 - thrB HEPCGN_09110 0.52 -1.8 569,374 - thrB HEPCGN_09110 0.52 -2.0 569,556 + thrB HEPCGN_09110 0.71 -4.1 569,557 - thrB HEPCGN_09110 0.71 -0.6 569,720 - thrB HEPCGN_09110 0.89 -2.1 569,810 + -0.7 569,852 - -0.1 569,885 - -3.6 569,934 + -3.0 569,934 + -2.5 569,946 + -1.8 569,947 - -1.9 569,947 - -1.6 570,134 - thrA HEPCGN_09115 0.13 -3.3 570,244 + thrA HEPCGN_09115 0.17 -4.4 570,361 + thrA HEPCGN_09115 0.22 -1.8 570,362 - thrA HEPCGN_09115 0.22 -2.5 570,475 - thrA HEPCGN_09115 0.26 -1.3 570,522 + thrA HEPCGN_09115 0.28 -1.5 570,523 - thrA HEPCGN_09115 0.28 -2.0 570,562 + thrA HEPCGN_09115 0.30 -2.8 570,677 + thrA HEPCGN_09115 0.35 -1.0 570,749 + thrA HEPCGN_09115 0.38 -2.1 570,749 + thrA HEPCGN_09115 0.38 -2.8 570,749 + thrA HEPCGN_09115 0.38 -1.7 570,750 - thrA HEPCGN_09115 0.38 -0.5 570,750 - thrA HEPCGN_09115 0.38 -1.0 570,775 + thrA HEPCGN_09115 0.39 -3.0 570,795 - thrA HEPCGN_09115 0.39 +0.3 570,795 - thrA HEPCGN_09115 0.39 -0.7 570,802 + thrA HEPCGN_09115 0.40 -3.8 571,148 + thrA HEPCGN_09115 0.54 -2.6 571,148 + thrA HEPCGN_09115 0.54 -1.8 571,149 - thrA HEPCGN_09115 0.54 -0.8 571,152 + thrA HEPCGN_09115 0.54 -1.7 571,152 + thrA HEPCGN_09115 0.54 -1.5 571,152 + thrA HEPCGN_09115 0.54 -1.6 571,152 + thrA HEPCGN_09115 0.54 -1.9 571,221 + thrA HEPCGN_09115 0.57 -2.8 571,222 - thrA HEPCGN_09115 0.57 -2.5 571,348 + thrA HEPCGN_09115 0.62 -0.3 571,348 + thrA HEPCGN_09115 0.62 -0.8 571,376 + thrA HEPCGN_09115 0.63 -3.2 571,411 + thrA HEPCGN_09115 0.64 -1.4 571,412 - thrA HEPCGN_09115 0.64 -4.6 571,478 - thrA HEPCGN_09115 0.67 -2.4 571,512 + thrA HEPCGN_09115 0.68 -1.9 571,537 - thrA HEPCGN_09115 0.70 -2.2 571,537 - thrA HEPCGN_09115 0.70 -3.5 571,589 - thrA HEPCGN_09115 0.72 -2.7 571,590 + thrA HEPCGN_09115 0.72 -3.1 571,590 + thrA HEPCGN_09115 0.72 -1.2 571,590 + thrA HEPCGN_09115 0.72 -1.8 571,591 - thrA HEPCGN_09115 0.72 -2.4 571,591 - thrA HEPCGN_09115 0.72 -1.6 571,663 - thrA HEPCGN_09115 0.75 -3.5 571,799 - thrA HEPCGN_09115 0.80 -1.6 571,853 - thrA HEPCGN_09115 0.82 -1.5 571,888 + thrA HEPCGN_09115 0.84 -1.8 571,963 + thrA HEPCGN_09115 0.87 -1.2 571,963 + thrA HEPCGN_09115 0.87 -2.0 571,963 + thrA HEPCGN_09115 0.87 -1.6 571,963 + thrA HEPCGN_09115 0.87 -5.6 571,964 - thrA HEPCGN_09115 0.87 -2.4 571,985 + thrA HEPCGN_09115 0.88 -3.2 571,985 + thrA HEPCGN_09115 0.88 -3.4 571,986 - thrA HEPCGN_09115 0.88 -1.1 572,263 + -4.5 572,264 - -1.6 572,294 + -2.6 572,294 + -1.6 572,382 + HEPCGN_09120 0.21 -2.7 572,410 - HEPCGN_09120 0.64 -1.5 572,422 - HEPCGN_09120 0.82 +0.1 572,422 - HEPCGN_09120 0.82 -0.6 572,473 + -0.5 572,479 + -2.7 572,479 + -2.8 572,480 - +0.4 572,482 - +0.6 572,497 + -1.7 572,505 + -1.6 572,526 + -0.8 572,593 + +0.1 572,593 + -0.6 572,594 - +0.1 572,594 - -1.1 572,594 - -0.1 572,634 - +0.1 572,671 - -0.1 572,671 - +0.9 572,713 + -0.1 572,858 - lasT HEPCGN_09125 0.31 -0.1 572,869 + lasT HEPCGN_09125 0.32 +0.9 572,882 + lasT HEPCGN_09125 0.34 -3.2 572,883 - lasT HEPCGN_09125 0.34 -0.8 572,883 - lasT HEPCGN_09125 0.34 +0.0 572,943 + lasT HEPCGN_09125 0.43 -0.3 572,962 + lasT HEPCGN_09125 0.46 +0.6 573,081 - lasT HEPCGN_09125 0.63 +0.3 573,081 - lasT HEPCGN_09125 0.63 -0.7
Or see this region's nucleotide sequence