Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04700

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntruvB and znuB are separated by 147 nucleotidesznuB and znuC overlap by 4 nucleotidesznuC and znuA are separated by 24 nucleotides HEPCGN_04695: ruvB - Holliday junction branch migration DNA helicase RuvB, at 817,452 to 818,462 ruvB HEPCGN_04700: znuB - zinc ABC transporter permease subunit ZnuB, at 818,610 to 819,395 znuB HEPCGN_04705: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 819,392 to 820,147 znuC HEPCGN_04710: znuA - zinc ABC transporter substrate-binding protein ZnuA, at 820,172 to 821,158 znuA Position (kb) 818 819 820Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 818.022 kb on + strand, within ruvBat 818.024 kb on + strand, within ruvBat 818.461 kb on - strandat 818.461 kb on - strandat 818.531 kb on - strandat 818.558 kb on + strandat 818.558 kb on + strandat 818.612 kb on - strandat 818.793 kb on - strand, within znuBat 819.009 kb on - strand, within znuBat 819.056 kb on - strand, within znuBat 819.093 kb on - strand, within znuBat 819.141 kb on + strand, within znuBat 819.180 kb on + strand, within znuBat 819.224 kb on - strand, within znuBat 819.287 kb on + strand, within znuBat 819.299 kb on - strand, within znuBat 819.306 kb on - strand, within znuBat 819.452 kb on - strandat 819.465 kb on + strandat 819.466 kb on - strandat 819.469 kb on + strand, within znuCat 819.503 kb on - strand, within znuCat 819.624 kb on - strand, within znuCat 819.662 kb on - strand, within znuCat 819.672 kb on - strand, within znuCat 819.848 kb on - strand, within znuCat 819.856 kb on + strand, within znuCat 819.857 kb on - strand, within znuCat 819.933 kb on - strand, within znuCat 819.933 kb on - strand, within znuCat 819.948 kb on - strand, within znuCat 820.021 kb on + strand, within znuCat 820.181 kb on + strandat 820.208 kb on - strandat 820.380 kb on + strand, within znuA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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818,022 + ruvB HEPCGN_04695 0.56 -1.6
818,024 + ruvB HEPCGN_04695 0.57 -2.4
818,461 - -0.4
818,461 - +1.9
818,531 - +0.8
818,558 + -0.4
818,558 + +0.3
818,612 - -0.1
818,793 - znuB HEPCGN_04700 0.23 -0.6
819,009 - znuB HEPCGN_04700 0.51 -2.6
819,056 - znuB HEPCGN_04700 0.57 -1.5
819,093 - znuB HEPCGN_04700 0.61 -0.5
819,141 + znuB HEPCGN_04700 0.68 -1.1
819,180 + znuB HEPCGN_04700 0.73 +0.9
819,224 - znuB HEPCGN_04700 0.78 -1.0
819,287 + znuB HEPCGN_04700 0.86 -1.7
819,299 - znuB HEPCGN_04700 0.88 -1.5
819,306 - znuB HEPCGN_04700 0.89 +1.6
819,452 - +0.2
819,465 + +2.6
819,466 - +1.0
819,469 + znuC HEPCGN_04705 0.10 -3.1
819,503 - znuC HEPCGN_04705 0.15 -0.6
819,624 - znuC HEPCGN_04705 0.31 +0.5
819,662 - znuC HEPCGN_04705 0.36 +1.0
819,672 - znuC HEPCGN_04705 0.37 -0.6
819,848 - znuC HEPCGN_04705 0.60 +1.5
819,856 + znuC HEPCGN_04705 0.61 +0.5
819,857 - znuC HEPCGN_04705 0.62 -0.5
819,933 - znuC HEPCGN_04705 0.72 -0.7
819,933 - znuC HEPCGN_04705 0.72 -0.1
819,948 - znuC HEPCGN_04705 0.74 -0.6
820,021 + znuC HEPCGN_04705 0.83 -1.1
820,181 + -0.1
820,208 - -0.4
820,380 + znuA HEPCGN_04710 0.21 -0.4

Or see this region's nucleotide sequence