Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03805

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHEPCGN_03800 and HEPCGN_03805 overlap by 8 nucleotidesHEPCGN_03805 and HEPCGN_03810 are separated by 14 nucleotides HEPCGN_03800: HEPCGN_03800 - phage portal protein, at 667,529 to 668,755 _03800 HEPCGN_03805: HEPCGN_03805 - HK97 family phage prohead protease, at 668,748 to 669,347 _03805 HEPCGN_03810: HEPCGN_03810 - phage major capsid protein, at 669,362 to 670,579 _03810 Position (kb) 668 669 670Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 667.816 kb on + strand, within HEPCGN_03800at 667.817 kb on - strand, within HEPCGN_03800at 667.817 kb on - strand, within HEPCGN_03800at 667.865 kb on + strand, within HEPCGN_03800at 667.865 kb on + strand, within HEPCGN_03800at 667.865 kb on + strand, within HEPCGN_03800at 667.865 kb on + strand, within HEPCGN_03800at 667.867 kb on + strand, within HEPCGN_03800at 667.867 kb on + strand, within HEPCGN_03800at 667.868 kb on - strand, within HEPCGN_03800at 667.868 kb on - strand, within HEPCGN_03800at 667.918 kb on + strand, within HEPCGN_03800at 667.960 kb on + strand, within HEPCGN_03800at 667.965 kb on - strand, within HEPCGN_03800at 668.113 kb on + strand, within HEPCGN_03800at 668.113 kb on + strand, within HEPCGN_03800at 668.114 kb on - strand, within HEPCGN_03800at 668.114 kb on - strand, within HEPCGN_03800at 668.156 kb on - strand, within HEPCGN_03800at 668.206 kb on + strand, within HEPCGN_03800at 668.207 kb on - strand, within HEPCGN_03800at 668.323 kb on + strand, within HEPCGN_03800at 668.362 kb on + strand, within HEPCGN_03800at 668.363 kb on - strand, within HEPCGN_03800at 668.414 kb on - strand, within HEPCGN_03800at 668.416 kb on + strand, within HEPCGN_03800at 668.528 kb on + strand, within HEPCGN_03800at 668.528 kb on + strand, within HEPCGN_03800at 668.528 kb on + strand, within HEPCGN_03800at 668.529 kb on - strand, within HEPCGN_03800at 668.529 kb on - strand, within HEPCGN_03800at 668.647 kb on + strandat 668.717 kb on - strandat 668.723 kb on - strandat 668.800 kb on - strandat 668.800 kb on - strandat 668.839 kb on + strand, within HEPCGN_03805at 668.840 kb on - strand, within HEPCGN_03805at 668.844 kb on - strand, within HEPCGN_03805at 668.908 kb on + strand, within HEPCGN_03805at 668.909 kb on - strand, within HEPCGN_03805at 668.909 kb on - strand, within HEPCGN_03805at 668.923 kb on + strand, within HEPCGN_03805at 668.923 kb on + strand, within HEPCGN_03805at 668.948 kb on + strand, within HEPCGN_03805at 668.949 kb on - strand, within HEPCGN_03805at 669.010 kb on + strand, within HEPCGN_03805at 669.011 kb on - strand, within HEPCGN_03805at 669.015 kb on + strand, within HEPCGN_03805at 669.189 kb on + strand, within HEPCGN_03805at 669.189 kb on + strand, within HEPCGN_03805at 669.190 kb on - strand, within HEPCGN_03805at 669.345 kb on + strandat 669.351 kb on + strandat 669.355 kb on - strandat 669.409 kb on + strandat 669.409 kb on + strandat 669.549 kb on + strand, within HEPCGN_03810at 669.550 kb on - strand, within HEPCGN_03810at 669.550 kb on - strand, within HEPCGN_03810at 669.550 kb on - strand, within HEPCGN_03810at 669.551 kb on + strand, within HEPCGN_03810at 669.552 kb on - strand, within HEPCGN_03810at 669.587 kb on - strand, within HEPCGN_03810at 669.745 kb on + strand, within HEPCGN_03810at 669.745 kb on + strand, within HEPCGN_03810at 669.955 kb on + strand, within HEPCGN_03810at 669.955 kb on + strand, within HEPCGN_03810at 670.028 kb on + strand, within HEPCGN_03810at 670.239 kb on - strand, within HEPCGN_03810at 670.274 kb on - strand, within HEPCGN_03810at 670.274 kb on - strand, within HEPCGN_03810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
667,816 + HEPCGN_03800 0.23 +0.8
667,817 - HEPCGN_03800 0.23 +3.1
667,817 - HEPCGN_03800 0.23 +0.1
667,865 + HEPCGN_03800 0.27 +0.1
667,865 + HEPCGN_03800 0.27 -1.4
667,865 + HEPCGN_03800 0.27 +0.5
667,865 + HEPCGN_03800 0.27 +0.2
667,867 + HEPCGN_03800 0.28 -0.8
667,867 + HEPCGN_03800 0.28 -0.3
667,868 - HEPCGN_03800 0.28 +0.2
667,868 - HEPCGN_03800 0.28 -1.6
667,918 + HEPCGN_03800 0.32 -0.2
667,960 + HEPCGN_03800 0.35 -0.6
667,965 - HEPCGN_03800 0.36 -0.3
668,113 + HEPCGN_03800 0.48 +0.5
668,113 + HEPCGN_03800 0.48 -0.3
668,114 - HEPCGN_03800 0.48 -0.7
668,114 - HEPCGN_03800 0.48 +0.1
668,156 - HEPCGN_03800 0.51 +0.8
668,206 + HEPCGN_03800 0.55 -0.1
668,207 - HEPCGN_03800 0.55 -1.2
668,323 + HEPCGN_03800 0.65 +0.3
668,362 + HEPCGN_03800 0.68 -0.9
668,363 - HEPCGN_03800 0.68 +0.1
668,414 - HEPCGN_03800 0.72 -0.8
668,416 + HEPCGN_03800 0.72 +0.4
668,528 + HEPCGN_03800 0.81 -0.8
668,528 + HEPCGN_03800 0.81 +0.9
668,528 + HEPCGN_03800 0.81 +0.0
668,529 - HEPCGN_03800 0.81 -0.2
668,529 - HEPCGN_03800 0.81 +0.6
668,647 + -0.1
668,717 - -4.1
668,723 - +0.4
668,800 - +0.3
668,800 - -1.9
668,839 + HEPCGN_03805 0.15 +0.3
668,840 - HEPCGN_03805 0.15 +1.7
668,844 - HEPCGN_03805 0.16 +0.6
668,908 + HEPCGN_03805 0.27 +0.3
668,909 - HEPCGN_03805 0.27 +0.2
668,909 - HEPCGN_03805 0.27 -0.0
668,923 + HEPCGN_03805 0.29 +0.2
668,923 + HEPCGN_03805 0.29 -0.3
668,948 + HEPCGN_03805 0.33 -0.2
668,949 - HEPCGN_03805 0.34 -3.0
669,010 + HEPCGN_03805 0.44 -2.0
669,011 - HEPCGN_03805 0.44 +1.8
669,015 + HEPCGN_03805 0.45 -0.3
669,189 + HEPCGN_03805 0.73 +0.3
669,189 + HEPCGN_03805 0.73 +1.4
669,190 - HEPCGN_03805 0.74 +0.7
669,345 + +0.1
669,351 + +0.2
669,355 - -0.4
669,409 + -0.5
669,409 + +0.2
669,549 + HEPCGN_03810 0.15 -0.2
669,550 - HEPCGN_03810 0.15 -0.1
669,550 - HEPCGN_03810 0.15 -1.2
669,550 - HEPCGN_03810 0.15 -0.6
669,551 + HEPCGN_03810 0.16 -0.2
669,552 - HEPCGN_03810 0.16 -0.4
669,587 - HEPCGN_03810 0.18 -0.3
669,745 + HEPCGN_03810 0.31 +0.1
669,745 + HEPCGN_03810 0.31 +0.8
669,955 + HEPCGN_03810 0.49 -0.2
669,955 + HEPCGN_03810 0.49 -0.4
670,028 + HEPCGN_03810 0.55 +0.9
670,239 - HEPCGN_03810 0.72 -0.4
670,274 - HEPCGN_03810 0.75 -0.4
670,274 - HEPCGN_03810 0.75 -0.2

Or see this region's nucleotide sequence