Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02730

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyehD and yehC are separated by 80 nucleotidesyehC and yehB are separated by 15 nucleotidesyehB and yehA are separated by 15 nucleotides HEPCGN_02720: yehD - Uncharacterized fimbrial-like protein YehD, at 454,514 to 455,056 yehD HEPCGN_02725: yehC - putative fimbrial chaperone YehC, at 455,137 to 455,811 yehC HEPCGN_02730: yehB - Outer membrane usher protein YehB, at 455,827 to 458,307 yehB HEPCGN_02735: yehA - putative fimbrial-like adhesin protein, at 458,323 to 459,357 yehA Position (kb) 455 456 457 458 459Strain fitness (log2 ratio) -2 -1 0 1 2at 455.134 kb on - strandat 455.311 kb on - strand, within yehCat 455.888 kb on - strandat 456.173 kb on - strand, within yehBat 456.279 kb on + strand, within yehBat 456.299 kb on - strand, within yehBat 456.327 kb on + strand, within yehBat 456.351 kb on + strand, within yehBat 456.352 kb on - strand, within yehBat 456.352 kb on - strand, within yehBat 456.355 kb on + strand, within yehBat 456.355 kb on + strand, within yehBat 456.356 kb on - strand, within yehBat 456.356 kb on - strand, within yehBat 456.356 kb on - strand, within yehBat 456.356 kb on - strand, within yehBat 456.360 kb on - strand, within yehBat 456.383 kb on + strand, within yehBat 456.513 kb on + strand, within yehBat 456.513 kb on + strand, within yehBat 456.514 kb on - strand, within yehBat 456.517 kb on + strand, within yehBat 456.517 kb on + strand, within yehBat 456.517 kb on + strand, within yehBat 456.518 kb on - strand, within yehBat 456.640 kb on - strand, within yehBat 456.714 kb on + strand, within yehBat 456.791 kb on - strand, within yehBat 456.803 kb on - strand, within yehBat 456.820 kb on - strand, within yehBat 456.914 kb on - strand, within yehBat 456.931 kb on - strand, within yehBat 456.936 kb on - strand, within yehBat 457.050 kb on + strand, within yehBat 457.100 kb on - strand, within yehBat 457.213 kb on + strand, within yehBat 457.214 kb on - strand, within yehBat 457.233 kb on + strand, within yehBat 457.337 kb on + strand, within yehBat 457.347 kb on - strand, within yehBat 457.380 kb on + strand, within yehBat 457.426 kb on + strand, within yehBat 457.426 kb on + strand, within yehBat 457.426 kb on + strand, within yehBat 457.427 kb on - strand, within yehBat 457.544 kb on + strand, within yehBat 457.546 kb on + strand, within yehBat 457.547 kb on - strand, within yehBat 457.547 kb on - strand, within yehBat 457.593 kb on + strand, within yehBat 457.594 kb on - strand, within yehBat 457.635 kb on + strand, within yehBat 457.810 kb on - strand, within yehBat 457.863 kb on + strand, within yehBat 457.873 kb on + strand, within yehBat 457.873 kb on + strand, within yehBat 458.378 kb on - strandat 458.464 kb on + strand, within yehAat 458.536 kb on - strand, within yehAat 458.604 kb on + strand, within yehAat 458.823 kb on - strand, within yehAat 458.888 kb on - strand, within yehAat 458.968 kb on - strand, within yehAat 459.249 kb on + strand, within yehA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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455,134 - +0.1
455,311 - yehC HEPCGN_02725 0.26 +0.7
455,888 - +0.4
456,173 - yehB HEPCGN_02730 0.14 +0.1
456,279 + yehB HEPCGN_02730 0.18 +0.0
456,299 - yehB HEPCGN_02730 0.19 -0.2
456,327 + yehB HEPCGN_02730 0.20 -1.0
456,351 + yehB HEPCGN_02730 0.21 +0.1
456,352 - yehB HEPCGN_02730 0.21 +2.4
456,352 - yehB HEPCGN_02730 0.21 +0.1
456,355 + yehB HEPCGN_02730 0.21 +1.5
456,355 + yehB HEPCGN_02730 0.21 -2.6
456,356 - yehB HEPCGN_02730 0.21 -1.5
456,356 - yehB HEPCGN_02730 0.21 -2.3
456,356 - yehB HEPCGN_02730 0.21 +0.3
456,356 - yehB HEPCGN_02730 0.21 -0.6
456,360 - yehB HEPCGN_02730 0.21 -1.2
456,383 + yehB HEPCGN_02730 0.22 +0.2
456,513 + yehB HEPCGN_02730 0.28 +0.4
456,513 + yehB HEPCGN_02730 0.28 -0.1
456,514 - yehB HEPCGN_02730 0.28 +0.0
456,517 + yehB HEPCGN_02730 0.28 -0.6
456,517 + yehB HEPCGN_02730 0.28 -1.2
456,517 + yehB HEPCGN_02730 0.28 -0.9
456,518 - yehB HEPCGN_02730 0.28 -0.5
456,640 - yehB HEPCGN_02730 0.33 -0.4
456,714 + yehB HEPCGN_02730 0.36 -0.3
456,791 - yehB HEPCGN_02730 0.39 +0.2
456,803 - yehB HEPCGN_02730 0.39 -0.1
456,820 - yehB HEPCGN_02730 0.40 +0.9
456,914 - yehB HEPCGN_02730 0.44 -0.7
456,931 - yehB HEPCGN_02730 0.44 -2.3
456,936 - yehB HEPCGN_02730 0.45 +0.1
457,050 + yehB HEPCGN_02730 0.49 +0.1
457,100 - yehB HEPCGN_02730 0.51 +0.1
457,213 + yehB HEPCGN_02730 0.56 -0.0
457,214 - yehB HEPCGN_02730 0.56 +0.9
457,233 + yehB HEPCGN_02730 0.57 +0.3
457,337 + yehB HEPCGN_02730 0.61 +0.6
457,347 - yehB HEPCGN_02730 0.61 +0.6
457,380 + yehB HEPCGN_02730 0.63 +0.1
457,426 + yehB HEPCGN_02730 0.64 -0.0
457,426 + yehB HEPCGN_02730 0.64 +0.5
457,426 + yehB HEPCGN_02730 0.64 -0.3
457,427 - yehB HEPCGN_02730 0.64 +0.6
457,544 + yehB HEPCGN_02730 0.69 +0.5
457,546 + yehB HEPCGN_02730 0.69 -0.4
457,547 - yehB HEPCGN_02730 0.69 -0.7
457,547 - yehB HEPCGN_02730 0.69 -0.4
457,593 + yehB HEPCGN_02730 0.71 -1.3
457,594 - yehB HEPCGN_02730 0.71 +1.7
457,635 + yehB HEPCGN_02730 0.73 +0.4
457,810 - yehB HEPCGN_02730 0.80 +0.2
457,863 + yehB HEPCGN_02730 0.82 -0.6
457,873 + yehB HEPCGN_02730 0.82 -2.2
457,873 + yehB HEPCGN_02730 0.82 +0.4
458,378 - +0.1
458,464 + yehA HEPCGN_02735 0.14 +0.2
458,536 - yehA HEPCGN_02735 0.21 +0.1
458,604 + yehA HEPCGN_02735 0.27 -1.0
458,823 - yehA HEPCGN_02735 0.48 +0.3
458,888 - yehA HEPCGN_02735 0.55 -0.0
458,968 - yehA HEPCGN_02735 0.62 +0.2
459,249 + yehA HEPCGN_02735 0.89 +1.0

Or see this region's nucleotide sequence