Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17620

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpheT and NOLOHH_17610 are separated by 4 nucleotidesNOLOHH_17610 and btuC are separated by 100 nucleotidesbtuC and btuE are separated by 62 nucleotidesbtuE and btuD overlap by 1 nucleotides NOLOHH_17605: pheT - phenylalanine--tRNA ligase subunit beta, at 3,455,273 to 3,457,660 pheT NOLOHH_17610: NOLOHH_17610 - Integration host factor subunit alpha, at 3,457,665 to 3,457,964 _17610 NOLOHH_17620: btuC - vitamin B12 ABC transporter permease BtuC, at 3,458,065 to 3,459,045 btuC NOLOHH_17625: btuE - bifunctional thioredoxin/glutathione peroxidase, at 3,459,108 to 3,459,659 btuE NOLOHH_17630: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 3,459,659 to 3,460,408 btuD Position (kb) 3458 3459 3460Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3457.972 kb on + strandat 3457.972 kb on + strandat 3458.334 kb on - strand, within btuCat 3458.453 kb on + strand, within btuCat 3458.462 kb on + strand, within btuCat 3458.593 kb on + strand, within btuCat 3458.593 kb on + strand, within btuCat 3458.700 kb on + strand, within btuCat 3458.850 kb on + strand, within btuCat 3458.888 kb on + strand, within btuCat 3459.062 kb on + strandat 3459.405 kb on - strand, within btuEat 3459.533 kb on + strand, within btuEat 3459.657 kb on + strandat 3459.678 kb on + strandat 3459.678 kb on + strandat 3459.935 kb on + strand, within btuDat 3459.959 kb on - strand, within btuD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,457,972 + +2.4
3,457,972 + -3.5
3,458,334 - btuC NOLOHH_17620 0.27 -0.7
3,458,453 + btuC NOLOHH_17620 0.40 -0.4
3,458,462 + btuC NOLOHH_17620 0.40 -2.6
3,458,593 + btuC NOLOHH_17620 0.54 +0.9
3,458,593 + btuC NOLOHH_17620 0.54 -1.0
3,458,700 + btuC NOLOHH_17620 0.65 -1.7
3,458,850 + btuC NOLOHH_17620 0.80 +1.2
3,458,888 + btuC NOLOHH_17620 0.84 +2.5
3,459,062 + +3.6
3,459,405 - btuE NOLOHH_17625 0.54 +0.9
3,459,533 + btuE NOLOHH_17625 0.77 +2.6
3,459,657 + -1.7
3,459,678 + +0.9
3,459,678 + +2.4
3,459,935 + btuD NOLOHH_17630 0.37 +1.7
3,459,959 - btuD NOLOHH_17630 0.40 -2.2

Or see this region's nucleotide sequence