Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uxuR and uxuB are separated by 262 nucleotides uxuB and uxuA are separated by 80 nucleotides
NOLOHH_03880: uxuR - Uxu operon transcriptional regulator, at 694,095 to 694,820
uxuR
NOLOHH_03885: uxuB - D-mannonate oxidoreductase, at 695,083 to 696,543
uxuB
NOLOHH_03890: uxuA - mannonate dehydratase, at 696,624 to 697,808
uxuA
Position (kb) 695
696
697 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 694.084 kb on - strand at 694.291 kb on + strand, within uxuR at 694.548 kb on - strand, within uxuR at 694.573 kb on - strand, within uxuR at 694.573 kb on - strand, within uxuR at 694.654 kb on + strand, within uxuR at 694.654 kb on + strand, within uxuR at 694.654 kb on + strand, within uxuR at 694.654 kb on + strand, within uxuR at 694.655 kb on - strand, within uxuR at 694.655 kb on - strand, within uxuR at 694.655 kb on - strand, within uxuR at 694.655 kb on - strand, within uxuR at 694.720 kb on - strand, within uxuR at 694.789 kb on + strand at 694.801 kb on - strand at 694.838 kb on - strand at 694.975 kb on + strand at 694.975 kb on + strand at 694.976 kb on - strand at 694.977 kb on + strand at 694.984 kb on - strand at 695.040 kb on + strand at 695.084 kb on + strand at 695.234 kb on + strand, within uxuB at 695.445 kb on + strand, within uxuB at 695.445 kb on + strand, within uxuB at 695.512 kb on - strand, within uxuB at 695.634 kb on - strand, within uxuB at 695.664 kb on + strand, within uxuB at 695.664 kb on + strand, within uxuB at 695.665 kb on - strand, within uxuB at 695.665 kb on - strand, within uxuB at 695.665 kb on - strand, within uxuB at 695.665 kb on - strand, within uxuB at 695.665 kb on - strand, within uxuB at 695.721 kb on + strand, within uxuB at 695.721 kb on + strand, within uxuB at 695.722 kb on - strand, within uxuB at 695.751 kb on + strand, within uxuB at 695.752 kb on - strand, within uxuB at 695.752 kb on - strand, within uxuB at 696.053 kb on + strand, within uxuB at 696.089 kb on - strand, within uxuB at 696.112 kb on - strand, within uxuB at 696.309 kb on - strand, within uxuB at 696.369 kb on + strand, within uxuB at 696.422 kb on + strand at 696.422 kb on + strand at 696.423 kb on - strand at 696.423 kb on - strand at 696.534 kb on + strand at 696.534 kb on + strand at 696.534 kb on + strand at 696.534 kb on + strand at 696.534 kb on + strand at 696.534 kb on + strand at 696.535 kb on - strand at 696.535 kb on - strand at 696.535 kb on - strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.538 kb on - strand at 696.538 kb on - strand at 696.538 kb on - strand at 696.538 kb on - strand at 696.538 kb on - strand at 696.706 kb on + strand at 696.838 kb on + strand, within uxuA at 696.838 kb on + strand, within uxuA at 696.838 kb on + strand, within uxuA at 696.838 kb on + strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.839 kb on - strand, within uxuA at 696.842 kb on + strand, within uxuA at 696.842 kb on + strand, within uxuA at 696.842 kb on + strand, within uxuA at 696.842 kb on + strand, within uxuA at 696.842 kb on + strand, within uxuA at 696.843 kb on - strand, within uxuA at 696.843 kb on - strand, within uxuA at 696.925 kb on + strand, within uxuA at 696.925 kb on + strand, within uxuA at 696.925 kb on + strand, within uxuA at 696.925 kb on + strand, within uxuA at 696.926 kb on - strand, within uxuA at 696.926 kb on - strand, within uxuA at 696.929 kb on + strand, within uxuA at 696.930 kb on - strand, within uxuA at 696.953 kb on + strand, within uxuA at 696.953 kb on + strand, within uxuA at 696.953 kb on + strand, within uxuA at 696.986 kb on - strand, within uxuA at 697.026 kb on + strand, within uxuA at 697.027 kb on - strand, within uxuA at 697.027 kb on - strand, within uxuA at 697.121 kb on + strand, within uxuA at 697.121 kb on + strand, within uxuA at 697.122 kb on - strand, within uxuA at 697.210 kb on + strand, within uxuA at 697.210 kb on + strand, within uxuA at 697.211 kb on - strand, within uxuA at 697.211 kb on - strand, within uxuA at 697.247 kb on - strand, within uxuA at 697.316 kb on + strand, within uxuA at 697.317 kb on - strand, within uxuA at 697.360 kb on + strand, within uxuA at 697.361 kb on - strand, within uxuA at 697.392 kb on - strand, within uxuA at 697.459 kb on + strand, within uxuA at 697.459 kb on + strand, within uxuA at 697.459 kb on + strand, within uxuA at 697.460 kb on - strand, within uxuA at 697.504 kb on + strand, within uxuA at 697.505 kb on - strand, within uxuA at 697.505 kb on - strand, within uxuA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 694,084 - -0.2 694,291 + uxuR NOLOHH_03880 0.27 -1.1 694,548 - uxuR NOLOHH_03880 0.62 +1.3 694,573 - uxuR NOLOHH_03880 0.66 +0.7 694,573 - uxuR NOLOHH_03880 0.66 +1.0 694,654 + uxuR NOLOHH_03880 0.77 -0.0 694,654 + uxuR NOLOHH_03880 0.77 -0.3 694,654 + uxuR NOLOHH_03880 0.77 +2.7 694,654 + uxuR NOLOHH_03880 0.77 -3.3 694,655 - uxuR NOLOHH_03880 0.77 -0.0 694,655 - uxuR NOLOHH_03880 0.77 -1.5 694,655 - uxuR NOLOHH_03880 0.77 -2.0 694,655 - uxuR NOLOHH_03880 0.77 -0.3 694,720 - uxuR NOLOHH_03880 0.86 -0.9 694,789 + +0.3 694,801 - -0.4 694,838 - -0.4 694,975 + +1.7 694,975 + +0.2 694,976 - -2.7 694,977 + +0.3 694,984 - -0.2 695,040 + -0.8 695,084 + -5.4 695,234 + uxuB NOLOHH_03885 0.10 +1.1 695,445 + uxuB NOLOHH_03885 0.25 +0.2 695,445 + uxuB NOLOHH_03885 0.25 +0.2 695,512 - uxuB NOLOHH_03885 0.29 +0.4 695,634 - uxuB NOLOHH_03885 0.38 +1.2 695,664 + uxuB NOLOHH_03885 0.40 -0.2 695,664 + uxuB NOLOHH_03885 0.40 +1.6 695,665 - uxuB NOLOHH_03885 0.40 -0.7 695,665 - uxuB NOLOHH_03885 0.40 +1.0 695,665 - uxuB NOLOHH_03885 0.40 -1.0 695,665 - uxuB NOLOHH_03885 0.40 -3.9 695,665 - uxuB NOLOHH_03885 0.40 -3.4 695,721 + uxuB NOLOHH_03885 0.44 +0.6 695,721 + uxuB NOLOHH_03885 0.44 -3.0 695,722 - uxuB NOLOHH_03885 0.44 -3.7 695,751 + uxuB NOLOHH_03885 0.46 +0.1 695,752 - uxuB NOLOHH_03885 0.46 +0.8 695,752 - uxuB NOLOHH_03885 0.46 -4.4 696,053 + uxuB NOLOHH_03885 0.66 -4.1 696,089 - uxuB NOLOHH_03885 0.69 -4.3 696,112 - uxuB NOLOHH_03885 0.70 +1.8 696,309 - uxuB NOLOHH_03885 0.84 +0.6 696,369 + uxuB NOLOHH_03885 0.88 -0.8 696,422 + -2.6 696,422 + +1.1 696,423 - -1.1 696,423 - +1.1 696,534 + -0.5 696,534 + -1.4 696,534 + -4.0 696,534 + -1.7 696,534 + -4.1 696,534 + +1.5 696,535 - +1.6 696,535 - -0.0 696,535 - +1.6 696,537 + +1.0 696,537 + -0.6 696,538 - +1.0 696,538 - -2.4 696,538 - -1.1 696,538 - -3.5 696,538 - +0.9 696,706 + +2.2 696,838 + uxuA NOLOHH_03890 0.18 -4.5 696,838 + uxuA NOLOHH_03890 0.18 -0.8 696,838 + uxuA NOLOHH_03890 0.18 +0.6 696,838 + uxuA NOLOHH_03890 0.18 -3.4 696,839 - uxuA NOLOHH_03890 0.18 -2.1 696,839 - uxuA NOLOHH_03890 0.18 +2.4 696,839 - uxuA NOLOHH_03890 0.18 +1.6 696,839 - uxuA NOLOHH_03890 0.18 +0.8 696,839 - uxuA NOLOHH_03890 0.18 -0.4 696,839 - uxuA NOLOHH_03890 0.18 +0.2 696,839 - uxuA NOLOHH_03890 0.18 -0.7 696,839 - uxuA NOLOHH_03890 0.18 +0.2 696,839 - uxuA NOLOHH_03890 0.18 -0.3 696,839 - uxuA NOLOHH_03890 0.18 +1.4 696,839 - uxuA NOLOHH_03890 0.18 -0.5 696,842 + uxuA NOLOHH_03890 0.18 +0.8 696,842 + uxuA NOLOHH_03890 0.18 -0.0 696,842 + uxuA NOLOHH_03890 0.18 +1.2 696,842 + uxuA NOLOHH_03890 0.18 +0.2 696,842 + uxuA NOLOHH_03890 0.18 -0.2 696,843 - uxuA NOLOHH_03890 0.18 +1.1 696,843 - uxuA NOLOHH_03890 0.18 -0.2 696,925 + uxuA NOLOHH_03890 0.25 -4.2 696,925 + uxuA NOLOHH_03890 0.25 -2.3 696,925 + uxuA NOLOHH_03890 0.25 +1.4 696,925 + uxuA NOLOHH_03890 0.25 -0.1 696,926 - uxuA NOLOHH_03890 0.25 -4.5 696,926 - uxuA NOLOHH_03890 0.25 +1.2 696,929 + uxuA NOLOHH_03890 0.26 -0.3 696,930 - uxuA NOLOHH_03890 0.26 +0.5 696,953 + uxuA NOLOHH_03890 0.28 +0.4 696,953 + uxuA NOLOHH_03890 0.28 +1.6 696,953 + uxuA NOLOHH_03890 0.28 +1.2 696,986 - uxuA NOLOHH_03890 0.31 -2.2 697,026 + uxuA NOLOHH_03890 0.34 -0.0 697,027 - uxuA NOLOHH_03890 0.34 -3.3 697,027 - uxuA NOLOHH_03890 0.34 -5.0 697,121 + uxuA NOLOHH_03890 0.42 -0.0 697,121 + uxuA NOLOHH_03890 0.42 -3.8 697,122 - uxuA NOLOHH_03890 0.42 -0.3 697,210 + uxuA NOLOHH_03890 0.49 -2.8 697,210 + uxuA NOLOHH_03890 0.49 -0.3 697,211 - uxuA NOLOHH_03890 0.50 +0.8 697,211 - uxuA NOLOHH_03890 0.50 +1.0 697,247 - uxuA NOLOHH_03890 0.53 -0.7 697,316 + uxuA NOLOHH_03890 0.58 +0.8 697,317 - uxuA NOLOHH_03890 0.58 -0.2 697,360 + uxuA NOLOHH_03890 0.62 +2.3 697,361 - uxuA NOLOHH_03890 0.62 -0.4 697,392 - uxuA NOLOHH_03890 0.65 -0.4 697,459 + uxuA NOLOHH_03890 0.70 -0.4 697,459 + uxuA NOLOHH_03890 0.70 -0.5 697,459 + uxuA NOLOHH_03890 0.70 +0.7 697,460 - uxuA NOLOHH_03890 0.71 +0.3 697,504 + uxuA NOLOHH_03890 0.74 +0.9 697,505 - uxuA NOLOHH_03890 0.74 -4.0 697,505 - uxuA NOLOHH_03890 0.74 +0.3
Or see this region's nucleotide sequence