Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00800

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_00795 and ybcJ are separated by 1 nucleotidesybcJ and ybcI are separated by 107 nucleotidesybcI and cysS are separated by 35 nucleotides NOLOHH_00795: NOLOHH_00795 - Bifunctional protein FolD, at 45,370 to 46,236 _00795 NOLOHH_00800: ybcJ - ribosome-associated protein YbcJ, at 46,238 to 46,450 ybcJ NOLOHH_00805: ybcI - Inner membrane protein YbcI, at 46,558 to 47,079 ybcI NOLOHH_00810: cysS - cysteine--tRNA ligase, at 47,115 to 48,500 cysS Position (kb) 46 47Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 45.343 kb on + strandat 45.343 kb on + strandat 45.347 kb on + strandat 46.434 kb on + strandat 46.528 kb on + strandat 46.640 kb on + strand, within ybcIat 46.641 kb on - strand, within ybcIat 46.682 kb on + strand, within ybcIat 46.682 kb on + strand, within ybcIat 46.683 kb on - strand, within ybcIat 46.683 kb on - strand, within ybcIat 46.775 kb on + strand, within ybcIat 46.776 kb on - strand, within ybcIat 47.116 kb on + strandat 47.116 kb on + strandat 47.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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45,343 + +1.5
45,343 + -5.4
45,347 + -3.1
46,434 + -0.9
46,528 + -3.1
46,640 + ybcI NOLOHH_00805 0.16 -1.6
46,641 - ybcI NOLOHH_00805 0.16 +1.5
46,682 + ybcI NOLOHH_00805 0.24 +0.6
46,682 + ybcI NOLOHH_00805 0.24 -1.8
46,683 - ybcI NOLOHH_00805 0.24 +0.7
46,683 - ybcI NOLOHH_00805 0.24 -0.4
46,775 + ybcI NOLOHH_00805 0.42 -1.6
46,776 - ybcI NOLOHH_00805 0.42 +0.2
47,116 + +0.8
47,116 + +0.2
47,117 - -4.1

Or see this region's nucleotide sequence