Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_21065 and BNILDI_21070 are separated by 2 nucleotides BNILDI_21070 and BNILDI_21075 overlap by 1 nucleotides BNILDI_21075 and acnA overlap by 59 nucleotides acnA and ybhI are separated by 182 nucleotides
BNILDI_21065: BNILDI_21065 - tail fiber assembly protein, at 4,238,995 to 4,239,435
_21065
BNILDI_21070: BNILDI_21070 - Phage tail protein, at 4,239,438 to 4,240,226
_21070
BNILDI_21075: BNILDI_21075 - hypothetical protein, at 4,240,226 to 4,240,393
_21075
BNILDI_21080: acnA - hydratase, at 4,240,335 to 4,242,539
acnA
BNILDI_21085: ybhI - Inner membrane protein YbhI, at 4,242,722 to 4,244,155
ybhI
Position (kb) 4240
4241
4242
4243 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4239.426 kb on - strand at 4239.469 kb on + strand at 4239.482 kb on + strand at 4239.519 kb on - strand, within BNILDI_21070 at 4239.626 kb on + strand, within BNILDI_21070 at 4239.626 kb on + strand, within BNILDI_21070 at 4239.686 kb on + strand, within BNILDI_21070 at 4239.687 kb on - strand, within BNILDI_21070 at 4239.687 kb on - strand, within BNILDI_21070 at 4239.687 kb on - strand, within BNILDI_21070 at 4239.688 kb on + strand, within BNILDI_21070 at 4239.688 kb on + strand, within BNILDI_21070 at 4239.689 kb on - strand, within BNILDI_21070 at 4239.689 kb on - strand, within BNILDI_21070 at 4239.799 kb on + strand, within BNILDI_21070 at 4239.800 kb on - strand, within BNILDI_21070 at 4239.818 kb on + strand, within BNILDI_21070 at 4239.827 kb on + strand, within BNILDI_21070 at 4239.903 kb on - strand, within BNILDI_21070 at 4239.992 kb on + strand, within BNILDI_21070 at 4240.099 kb on - strand, within BNILDI_21070 at 4240.232 kb on + strand at 4240.232 kb on + strand at 4240.232 kb on + strand at 4240.233 kb on - strand at 4240.270 kb on - strand, within BNILDI_21075 at 4240.367 kb on + strand at 4240.368 kb on - strand at 4240.402 kb on + strand at 4240.403 kb on - strand at 4240.410 kb on - strand at 4240.419 kb on - strand at 4240.456 kb on + strand at 4240.456 kb on + strand at 4240.457 kb on - strand at 4240.457 kb on - strand at 4240.462 kb on + strand at 4240.530 kb on - strand at 4240.552 kb on + strand at 4240.642 kb on + strand, within acnA at 4240.643 kb on - strand, within acnA at 4240.643 kb on - strand, within acnA at 4240.644 kb on + strand, within acnA at 4240.644 kb on + strand, within acnA at 4240.644 kb on + strand, within acnA at 4240.644 kb on + strand, within acnA at 4240.645 kb on - strand, within acnA at 4240.645 kb on - strand, within acnA at 4240.645 kb on - strand, within acnA at 4240.679 kb on + strand, within acnA at 4240.679 kb on + strand, within acnA at 4240.680 kb on - strand, within acnA at 4240.779 kb on - strand, within acnA at 4240.967 kb on + strand, within acnA at 4241.103 kb on + strand, within acnA at 4241.104 kb on - strand, within acnA at 4241.108 kb on - strand, within acnA at 4241.135 kb on + strand, within acnA at 4241.447 kb on - strand, within acnA at 4241.447 kb on - strand, within acnA at 4241.510 kb on + strand, within acnA at 4241.893 kb on + strand, within acnA at 4242.142 kb on + strand, within acnA at 4242.143 kb on - strand, within acnA at 4242.143 kb on - strand, within acnA at 4242.280 kb on + strand, within acnA at 4242.280 kb on + strand, within acnA at 4242.325 kb on - strand at 4242.402 kb on - strand at 4242.717 kb on + strand at 4242.794 kb on + strand at 4242.829 kb on + strand at 4242.986 kb on - strand, within ybhI at 4242.996 kb on + strand, within ybhI at 4243.396 kb on + strand, within ybhI at 4243.397 kb on - strand, within ybhI at 4243.412 kb on - strand, within ybhI at 4243.412 kb on - strand, within ybhI at 4243.426 kb on - strand, within ybhI at 4243.434 kb on + strand, within ybhI at 4243.463 kb on - strand, within ybhI
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,239,426 - +0.5 4,239,469 + +0.2 4,239,482 + +0.1 4,239,519 - BNILDI_21070 0.10 -1.3 4,239,626 + BNILDI_21070 0.24 +0.5 4,239,626 + BNILDI_21070 0.24 +0.4 4,239,686 + BNILDI_21070 0.31 +0.2 4,239,687 - BNILDI_21070 0.32 +0.3 4,239,687 - BNILDI_21070 0.32 -0.4 4,239,687 - BNILDI_21070 0.32 +1.6 4,239,688 + BNILDI_21070 0.32 -0.9 4,239,688 + BNILDI_21070 0.32 -0.4 4,239,689 - BNILDI_21070 0.32 -0.4 4,239,689 - BNILDI_21070 0.32 +0.3 4,239,799 + BNILDI_21070 0.46 +1.2 4,239,800 - BNILDI_21070 0.46 -0.0 4,239,818 + BNILDI_21070 0.48 +0.0 4,239,827 + BNILDI_21070 0.49 -1.6 4,239,903 - BNILDI_21070 0.59 -1.2 4,239,992 + BNILDI_21070 0.70 +0.6 4,240,099 - BNILDI_21070 0.84 +0.1 4,240,232 + +0.2 4,240,232 + -0.0 4,240,232 + -0.2 4,240,233 - -2.1 4,240,270 - BNILDI_21075 0.26 -1.6 4,240,367 + -2.3 4,240,368 - -0.3 4,240,402 + +0.6 4,240,403 - +0.1 4,240,410 - -0.3 4,240,419 - +0.1 4,240,456 + -1.1 4,240,456 + +0.5 4,240,457 - +0.1 4,240,457 - +0.0 4,240,462 + -0.4 4,240,530 - -0.3 4,240,552 + -2.0 4,240,642 + acnA BNILDI_21080 0.14 -0.0 4,240,643 - acnA BNILDI_21080 0.14 -0.5 4,240,643 - acnA BNILDI_21080 0.14 +0.4 4,240,644 + acnA BNILDI_21080 0.14 +0.3 4,240,644 + acnA BNILDI_21080 0.14 -0.4 4,240,644 + acnA BNILDI_21080 0.14 -1.1 4,240,644 + acnA BNILDI_21080 0.14 +0.9 4,240,645 - acnA BNILDI_21080 0.14 +0.1 4,240,645 - acnA BNILDI_21080 0.14 +0.4 4,240,645 - acnA BNILDI_21080 0.14 -1.9 4,240,679 + acnA BNILDI_21080 0.16 +1.1 4,240,679 + acnA BNILDI_21080 0.16 -0.0 4,240,680 - acnA BNILDI_21080 0.16 -0.1 4,240,779 - acnA BNILDI_21080 0.20 +0.6 4,240,967 + acnA BNILDI_21080 0.29 +0.4 4,241,103 + acnA BNILDI_21080 0.35 -1.1 4,241,104 - acnA BNILDI_21080 0.35 -2.4 4,241,108 - acnA BNILDI_21080 0.35 -0.0 4,241,135 + acnA BNILDI_21080 0.36 -0.2 4,241,447 - acnA BNILDI_21080 0.50 -0.1 4,241,447 - acnA BNILDI_21080 0.50 -2.4 4,241,510 + acnA BNILDI_21080 0.53 -0.3 4,241,893 + acnA BNILDI_21080 0.71 -1.8 4,242,142 + acnA BNILDI_21080 0.82 +0.4 4,242,143 - acnA BNILDI_21080 0.82 -0.3 4,242,143 - acnA BNILDI_21080 0.82 -0.2 4,242,280 + acnA BNILDI_21080 0.88 -1.4 4,242,280 + acnA BNILDI_21080 0.88 +1.2 4,242,325 - +0.5 4,242,402 - -0.2 4,242,717 + -0.1 4,242,794 + +1.6 4,242,829 + +0.2 4,242,986 - ybhI BNILDI_21085 0.18 -0.4 4,242,996 + ybhI BNILDI_21085 0.19 +1.3 4,243,396 + ybhI BNILDI_21085 0.47 -0.0 4,243,397 - ybhI BNILDI_21085 0.47 -3.1 4,243,412 - ybhI BNILDI_21085 0.48 +0.5 4,243,412 - ybhI BNILDI_21085 0.48 +0.5 4,243,426 - ybhI BNILDI_21085 0.49 -0.7 4,243,434 + ybhI BNILDI_21085 0.50 +0.0 4,243,463 - ybhI BNILDI_21085 0.52 +0.1
Or see this region's nucleotide sequence