Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhtA and dps are separated by 298 nucleotides dps and glnH are separated by 403 nucleotides
BNILDI_20830: rhtA - threonine/homoserine exporter RhtA, at 4,194,386 to 4,195,273
rhtA
BNILDI_20835: dps - DNA starvation/stationary phase protection protein Dps, at 4,195,572 to 4,196,075
dps
BNILDI_20840: glnH - glutamine ABC transporter substrate-binding protein GlnH, at 4,196,479 to 4,197,225
glnH
Position (kb) 4195
4196
4197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4194.869 kb on - strand, within rhtA at 4194.872 kb on + strand, within rhtA at 4195.030 kb on + strand, within rhtA at 4195.268 kb on - strand at 4195.272 kb on - strand at 4195.343 kb on - strand at 4195.344 kb on + strand at 4195.344 kb on + strand at 4195.345 kb on - strand at 4195.345 kb on - strand at 4195.367 kb on - strand at 4195.371 kb on - strand at 4195.466 kb on + strand at 4195.475 kb on + strand at 4195.520 kb on + strand at 4195.526 kb on + strand at 4195.526 kb on + strand at 4195.526 kb on + strand at 4195.527 kb on - strand at 4195.527 kb on - strand at 4195.549 kb on + strand at 4195.549 kb on + strand at 4195.549 kb on + strand at 4195.564 kb on - strand at 4195.571 kb on + strand at 4195.617 kb on + strand at 4195.618 kb on - strand at 4195.620 kb on - strand at 4195.661 kb on - strand, within dps at 4195.757 kb on - strand, within dps at 4195.840 kb on + strand, within dps at 4195.967 kb on - strand, within dps at 4196.010 kb on - strand, within dps at 4196.167 kb on + strand at 4196.167 kb on + strand at 4196.167 kb on + strand at 4196.168 kb on - strand at 4196.188 kb on - strand at 4196.273 kb on + strand at 4196.614 kb on + strand, within glnH at 4196.614 kb on + strand, within glnH at 4196.614 kb on + strand, within glnH at 4196.614 kb on + strand, within glnH at 4196.615 kb on - strand, within glnH at 4196.615 kb on - strand, within glnH at 4196.615 kb on - strand, within glnH at 4196.615 kb on - strand, within glnH at 4196.671 kb on + strand, within glnH at 4196.817 kb on - strand, within glnH at 4196.817 kb on - strand, within glnH at 4196.935 kb on - strand, within glnH at 4196.971 kb on + strand, within glnH
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,194,869 - rhtA BNILDI_20830 0.54 +2.0 4,194,872 + rhtA BNILDI_20830 0.55 -1.1 4,195,030 + rhtA BNILDI_20830 0.73 -0.7 4,195,268 - +0.9 4,195,272 - +0.2 4,195,343 - -1.6 4,195,344 + +0.2 4,195,344 + -0.4 4,195,345 - +0.2 4,195,345 - -0.0 4,195,367 - -1.2 4,195,371 - -1.2 4,195,466 + +0.0 4,195,475 + +0.3 4,195,520 + +0.9 4,195,526 + -0.1 4,195,526 + -0.4 4,195,526 + -1.2 4,195,527 - +0.3 4,195,527 - -0.0 4,195,549 + -2.8 4,195,549 + -0.0 4,195,549 + -1.4 4,195,564 - -0.7 4,195,571 + -0.2 4,195,617 + +0.6 4,195,618 - +0.3 4,195,620 - +0.4 4,195,661 - dps BNILDI_20835 0.18 +0.2 4,195,757 - dps BNILDI_20835 0.37 +0.4 4,195,840 + dps BNILDI_20835 0.53 -0.9 4,195,967 - dps BNILDI_20835 0.78 +0.1 4,196,010 - dps BNILDI_20835 0.87 -0.1 4,196,167 + -0.2 4,196,167 + -0.7 4,196,167 + +0.9 4,196,168 - -0.3 4,196,188 - -0.4 4,196,273 + -0.3 4,196,614 + glnH BNILDI_20840 0.18 +0.0 4,196,614 + glnH BNILDI_20840 0.18 +1.1 4,196,614 + glnH BNILDI_20840 0.18 -0.2 4,196,614 + glnH BNILDI_20840 0.18 -0.3 4,196,615 - glnH BNILDI_20840 0.18 -0.3 4,196,615 - glnH BNILDI_20840 0.18 -0.6 4,196,615 - glnH BNILDI_20840 0.18 +0.5 4,196,615 - glnH BNILDI_20840 0.18 +0.1 4,196,671 + glnH BNILDI_20840 0.26 +1.4 4,196,817 - glnH BNILDI_20840 0.45 +1.2 4,196,817 - glnH BNILDI_20840 0.45 +0.3 4,196,935 - glnH BNILDI_20840 0.61 +1.2 4,196,971 + glnH BNILDI_20840 0.66 -0.6
Or see this region's nucleotide sequence