Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliI and bssR are separated by 110 nucleotides bssR and rimO are separated by 212 nucleotides rimO and dgcI are separated by 46 nucleotides
BNILDI_20680: yliI - aldose sugar dehydrogenase YliI, at 4,161,906 to 4,163,021
yliI
BNILDI_20685: bssR - biofilm formation regulator BssR, at 4,163,132 to 4,163,515
bssR
BNILDI_20690: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 4,163,728 to 4,165,053
rimO
BNILDI_20695: dgcI - putative diguanylate cyclase DgcI, at 4,165,100 to 4,166,428
dgcI
Position (kb) 4163
4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4162.753 kb on - strand, within yliI at 4162.988 kb on + strand at 4163.053 kb on + strand at 4163.069 kb on + strand at 4163.228 kb on - strand, within bssR at 4163.264 kb on + strand, within bssR at 4163.390 kb on + strand, within bssR at 4163.391 kb on - strand, within bssR at 4163.391 kb on - strand, within bssR at 4163.418 kb on + strand, within bssR at 4163.419 kb on - strand, within bssR at 4163.445 kb on + strand, within bssR at 4163.445 kb on + strand, within bssR at 4163.446 kb on - strand, within bssR at 4163.515 kb on + strand at 4163.728 kb on - strand at 4163.738 kb on + strand at 4163.806 kb on - strand at 4163.892 kb on + strand, within rimO at 4163.957 kb on + strand, within rimO at 4163.957 kb on + strand, within rimO at 4164.040 kb on - strand, within rimO at 4164.044 kb on - strand, within rimO at 4164.073 kb on + strand, within rimO at 4164.074 kb on - strand, within rimO at 4164.074 kb on - strand, within rimO at 4164.148 kb on + strand, within rimO at 4164.202 kb on - strand, within rimO at 4164.210 kb on + strand, within rimO at 4164.251 kb on + strand, within rimO at 4164.272 kb on + strand, within rimO at 4164.272 kb on + strand, within rimO at 4164.272 kb on + strand, within rimO at 4164.345 kb on + strand, within rimO at 4164.442 kb on + strand, within rimO at 4164.627 kb on - strand, within rimO at 4164.639 kb on + strand, within rimO at 4164.639 kb on + strand, within rimO at 4164.733 kb on + strand, within rimO at 4164.958 kb on + strand at 4165.052 kb on - strand at 4165.112 kb on + strand at 4165.113 kb on - strand at 4165.142 kb on - strand at 4165.187 kb on - strand at 4165.262 kb on + strand, within dgcI at 4165.554 kb on + strand, within dgcI at 4165.559 kb on - strand, within dgcI at 4165.611 kb on - strand, within dgcI at 4165.654 kb on + strand, within dgcI at 4165.778 kb on + strand, within dgcI at 4165.852 kb on + strand, within dgcI at 4165.855 kb on - strand, within dgcI at 4165.886 kb on - strand, within dgcI at 4166.001 kb on + strand, within dgcI at 4166.004 kb on + strand, within dgcI
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,162,753 - yliI BNILDI_20680 0.76 -0.0 4,162,988 + -0.3 4,163,053 + -1.0 4,163,069 + -3.1 4,163,228 - bssR BNILDI_20685 0.25 -0.4 4,163,264 + bssR BNILDI_20685 0.34 -0.2 4,163,390 + bssR BNILDI_20685 0.67 +0.4 4,163,391 - bssR BNILDI_20685 0.67 +0.3 4,163,391 - bssR BNILDI_20685 0.67 +0.2 4,163,418 + bssR BNILDI_20685 0.74 -0.7 4,163,419 - bssR BNILDI_20685 0.75 -2.6 4,163,445 + bssR BNILDI_20685 0.82 -0.6 4,163,445 + bssR BNILDI_20685 0.82 -0.3 4,163,446 - bssR BNILDI_20685 0.82 -0.3 4,163,515 + -0.5 4,163,728 - +0.3 4,163,738 + -1.6 4,163,806 - +0.3 4,163,892 + rimO BNILDI_20690 0.12 -1.4 4,163,957 + rimO BNILDI_20690 0.17 -0.4 4,163,957 + rimO BNILDI_20690 0.17 -0.3 4,164,040 - rimO BNILDI_20690 0.24 +0.6 4,164,044 - rimO BNILDI_20690 0.24 -1.2 4,164,073 + rimO BNILDI_20690 0.26 +1.2 4,164,074 - rimO BNILDI_20690 0.26 -1.6 4,164,074 - rimO BNILDI_20690 0.26 -0.4 4,164,148 + rimO BNILDI_20690 0.32 +0.3 4,164,202 - rimO BNILDI_20690 0.36 -1.3 4,164,210 + rimO BNILDI_20690 0.36 +1.5 4,164,251 + rimO BNILDI_20690 0.39 +0.3 4,164,272 + rimO BNILDI_20690 0.41 +0.4 4,164,272 + rimO BNILDI_20690 0.41 +1.5 4,164,272 + rimO BNILDI_20690 0.41 -0.2 4,164,345 + rimO BNILDI_20690 0.47 -2.0 4,164,442 + rimO BNILDI_20690 0.54 -0.1 4,164,627 - rimO BNILDI_20690 0.68 -2.9 4,164,639 + rimO BNILDI_20690 0.69 +1.7 4,164,639 + rimO BNILDI_20690 0.69 -0.4 4,164,733 + rimO BNILDI_20690 0.76 -1.5 4,164,958 + -0.4 4,165,052 - +0.1 4,165,112 + +0.8 4,165,113 - +0.4 4,165,142 - +0.4 4,165,187 - +0.8 4,165,262 + dgcI BNILDI_20695 0.12 -1.8 4,165,554 + dgcI BNILDI_20695 0.34 -0.1 4,165,559 - dgcI BNILDI_20695 0.35 +1.1 4,165,611 - dgcI BNILDI_20695 0.38 -0.4 4,165,654 + dgcI BNILDI_20695 0.42 +0.1 4,165,778 + dgcI BNILDI_20695 0.51 +1.0 4,165,852 + dgcI BNILDI_20695 0.57 +1.5 4,165,855 - dgcI BNILDI_20695 0.57 +0.8 4,165,886 - dgcI BNILDI_20695 0.59 -0.6 4,166,001 + dgcI BNILDI_20695 0.68 -0.7 4,166,004 + dgcI BNILDI_20695 0.68 -1.6
Or see this region's nucleotide sequence