Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hcp and hcr are separated by 11 nucleotides hcr and poxB are separated by 132 nucleotides
BNILDI_20485: hcp - hydroxylamine reductase, at 4,127,973 to 4,129,625
hcp
BNILDI_20490: hcr - NADH oxidoreductase, at 4,129,637 to 4,130,605
hcr
BNILDI_20495: poxB - ubiquinone-dependent pyruvate dehydrogenase, at 4,130,738 to 4,132,456
poxB
Position (kb) 4129
4130
4131 Strain fitness (log2 ratio) -2
-1
0
1 at 4128.648 kb on + strand, within hcp at 4128.735 kb on + strand, within hcp at 4128.777 kb on + strand, within hcp at 4128.778 kb on - strand, within hcp at 4128.948 kb on + strand, within hcp at 4128.960 kb on - strand, within hcp at 4129.166 kb on + strand, within hcp at 4129.167 kb on - strand, within hcp at 4129.167 kb on - strand, within hcp at 4129.167 kb on - strand, within hcp at 4129.213 kb on - strand, within hcp at 4129.274 kb on + strand, within hcp at 4129.279 kb on - strand, within hcp at 4129.331 kb on - strand, within hcp at 4129.331 kb on - strand, within hcp at 4129.331 kb on - strand, within hcp at 4129.346 kb on + strand, within hcp at 4129.368 kb on - strand, within hcp at 4129.737 kb on - strand, within hcr at 4129.760 kb on + strand, within hcr at 4129.760 kb on + strand, within hcr at 4129.805 kb on + strand, within hcr at 4129.805 kb on + strand, within hcr at 4129.806 kb on - strand, within hcr at 4129.838 kb on + strand, within hcr at 4129.838 kb on + strand, within hcr at 4129.838 kb on + strand, within hcr at 4129.840 kb on + strand, within hcr at 4129.841 kb on - strand, within hcr at 4129.902 kb on + strand, within hcr at 4129.903 kb on - strand, within hcr at 4129.903 kb on - strand, within hcr at 4129.916 kb on + strand, within hcr at 4129.917 kb on - strand, within hcr at 4129.917 kb on - strand, within hcr at 4130.014 kb on + strand, within hcr at 4130.072 kb on + strand, within hcr at 4130.099 kb on - strand, within hcr at 4130.150 kb on - strand, within hcr at 4130.206 kb on - strand, within hcr at 4130.215 kb on - strand, within hcr at 4130.225 kb on - strand, within hcr at 4130.255 kb on - strand, within hcr at 4130.506 kb on + strand, within hcr at 4130.506 kb on + strand, within hcr at 4130.518 kb on + strand at 4130.555 kb on + strand at 4130.555 kb on + strand at 4130.560 kb on - strand at 4130.631 kb on + strand at 4130.699 kb on - strand at 4130.759 kb on + strand at 4130.760 kb on - strand at 4130.760 kb on - strand at 4130.833 kb on + strand at 4130.834 kb on - strand at 4130.845 kb on + strand at 4130.980 kb on - strand, within poxB at 4131.041 kb on - strand, within poxB at 4131.096 kb on + strand, within poxB at 4131.096 kb on + strand, within poxB at 4131.109 kb on + strand, within poxB at 4131.110 kb on - strand, within poxB at 4131.110 kb on - strand, within poxB at 4131.156 kb on + strand, within poxB at 4131.156 kb on + strand, within poxB at 4131.157 kb on - strand, within poxB at 4131.187 kb on + strand, within poxB at 4131.415 kb on + strand, within poxB at 4131.549 kb on + strand, within poxB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,128,648 + hcp BNILDI_20485 0.41 +1.2 4,128,735 + hcp BNILDI_20485 0.46 +0.2 4,128,777 + hcp BNILDI_20485 0.49 +0.3 4,128,778 - hcp BNILDI_20485 0.49 +0.3 4,128,948 + hcp BNILDI_20485 0.59 -1.4 4,128,960 - hcp BNILDI_20485 0.60 +0.6 4,129,166 + hcp BNILDI_20485 0.72 +0.5 4,129,167 - hcp BNILDI_20485 0.72 +0.6 4,129,167 - hcp BNILDI_20485 0.72 -0.1 4,129,167 - hcp BNILDI_20485 0.72 -1.2 4,129,213 - hcp BNILDI_20485 0.75 +0.0 4,129,274 + hcp BNILDI_20485 0.79 +0.5 4,129,279 - hcp BNILDI_20485 0.79 -0.4 4,129,331 - hcp BNILDI_20485 0.82 +0.4 4,129,331 - hcp BNILDI_20485 0.82 +0.4 4,129,331 - hcp BNILDI_20485 0.82 +0.6 4,129,346 + hcp BNILDI_20485 0.83 +0.2 4,129,368 - hcp BNILDI_20485 0.84 -0.1 4,129,737 - hcr BNILDI_20490 0.10 -1.2 4,129,760 + hcr BNILDI_20490 0.13 -0.9 4,129,760 + hcr BNILDI_20490 0.13 +0.3 4,129,805 + hcr BNILDI_20490 0.17 -2.3 4,129,805 + hcr BNILDI_20490 0.17 -0.1 4,129,806 - hcr BNILDI_20490 0.17 -0.3 4,129,838 + hcr BNILDI_20490 0.21 -0.5 4,129,838 + hcr BNILDI_20490 0.21 -1.7 4,129,838 + hcr BNILDI_20490 0.21 -1.6 4,129,840 + hcr BNILDI_20490 0.21 -1.6 4,129,841 - hcr BNILDI_20490 0.21 +0.7 4,129,902 + hcr BNILDI_20490 0.27 -0.2 4,129,903 - hcr BNILDI_20490 0.27 -0.0 4,129,903 - hcr BNILDI_20490 0.27 +0.1 4,129,916 + hcr BNILDI_20490 0.29 +0.1 4,129,917 - hcr BNILDI_20490 0.29 -0.1 4,129,917 - hcr BNILDI_20490 0.29 +0.2 4,130,014 + hcr BNILDI_20490 0.39 -1.1 4,130,072 + hcr BNILDI_20490 0.45 +0.3 4,130,099 - hcr BNILDI_20490 0.48 +0.7 4,130,150 - hcr BNILDI_20490 0.53 +0.0 4,130,206 - hcr BNILDI_20490 0.59 +0.0 4,130,215 - hcr BNILDI_20490 0.60 +0.6 4,130,225 - hcr BNILDI_20490 0.61 +0.2 4,130,255 - hcr BNILDI_20490 0.64 +0.7 4,130,506 + hcr BNILDI_20490 0.90 -0.7 4,130,506 + hcr BNILDI_20490 0.90 -0.1 4,130,518 + -0.2 4,130,555 + +0.2 4,130,555 + -0.2 4,130,560 - -0.6 4,130,631 + -0.9 4,130,699 - -0.0 4,130,759 + -0.9 4,130,760 - -0.6 4,130,760 - -0.7 4,130,833 + +0.6 4,130,834 - +0.2 4,130,845 + -0.0 4,130,980 - poxB BNILDI_20495 0.14 +0.6 4,131,041 - poxB BNILDI_20495 0.18 -0.2 4,131,096 + poxB BNILDI_20495 0.21 -0.1 4,131,096 + poxB BNILDI_20495 0.21 -0.1 4,131,109 + poxB BNILDI_20495 0.22 +0.6 4,131,110 - poxB BNILDI_20495 0.22 -0.1 4,131,110 - poxB BNILDI_20495 0.22 -0.1 4,131,156 + poxB BNILDI_20495 0.24 +0.2 4,131,156 + poxB BNILDI_20495 0.24 +0.3 4,131,157 - poxB BNILDI_20495 0.24 -0.3 4,131,187 + poxB BNILDI_20495 0.26 -0.6 4,131,415 + poxB BNILDI_20495 0.39 +0.7 4,131,549 + poxB BNILDI_20495 0.47 -0.1
Or see this region's nucleotide sequence