Strain Fitness in Escherichia coli ECRC62 around BNILDI_14345

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegX and yegW are separated by 51 nucleotidesyegW and yegV overlap by 27 nucleotidesyegV and BNILDI_14350 overlap by 4 nucleotidesBNILDI_14350 and yegT overlap by 4 nucleotides BNILDI_14335: yegX - Uncharacterized protein YegX, at 2,892,763 to 2,893,581 yegX BNILDI_14340: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 2,893,633 to 2,894,379 yegW BNILDI_14345: yegV - Uncharacterized sugar kinase YegV, at 2,894,353 to 2,895,318 yegV BNILDI_14350: BNILDI_14350 - Uncharacterized protein YegU, at 2,895,315 to 2,896,319 _14350 BNILDI_14355: yegT - Putative nucleoside transporter YegT, at 2,896,316 to 2,897,593 yegT Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -2 -1 0 1 2at 2893.417 kb on + strand, within yegXat 2893.417 kb on + strand, within yegXat 2893.487 kb on + strand, within yegXat 2893.487 kb on + strand, within yegXat 2893.488 kb on - strand, within yegXat 2893.515 kb on + strandat 2893.520 kb on + strandat 2893.520 kb on + strandat 2893.521 kb on - strandat 2893.596 kb on + strandat 2893.705 kb on + strandat 2893.711 kb on - strand, within yegWat 2893.711 kb on - strand, within yegWat 2893.767 kb on + strand, within yegWat 2893.819 kb on - strand, within yegWat 2894.074 kb on + strand, within yegWat 2894.074 kb on + strand, within yegWat 2894.126 kb on + strand, within yegWat 2894.188 kb on + strand, within yegWat 2894.354 kb on + strandat 2894.355 kb on - strandat 2894.355 kb on - strandat 2894.449 kb on + strandat 2894.453 kb on - strand, within yegVat 2894.494 kb on + strand, within yegVat 2894.534 kb on - strand, within yegVat 2894.725 kb on + strand, within yegVat 2894.726 kb on - strand, within yegVat 2894.755 kb on + strand, within yegVat 2895.302 kb on - strandat 2895.384 kb on + strandat 2895.405 kb on + strandat 2895.572 kb on + strand, within BNILDI_14350at 2895.827 kb on + strand, within BNILDI_14350at 2895.828 kb on - strand, within BNILDI_14350at 2895.863 kb on + strand, within BNILDI_14350at 2895.900 kb on + strand, within BNILDI_14350at 2895.901 kb on - strand, within BNILDI_14350at 2895.966 kb on - strand, within BNILDI_14350at 2896.055 kb on + strand, within BNILDI_14350at 2896.058 kb on + strand, within BNILDI_14350

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,893,417 + yegX BNILDI_14335 0.80 +1.3
2,893,417 + yegX BNILDI_14335 0.80 +0.2
2,893,487 + yegX BNILDI_14335 0.88 +0.5
2,893,487 + yegX BNILDI_14335 0.88 -0.7
2,893,488 - yegX BNILDI_14335 0.89 -0.9
2,893,515 + -0.4
2,893,520 + +0.9
2,893,520 + +0.2
2,893,521 - -1.5
2,893,596 + -0.5
2,893,705 + +0.2
2,893,711 - yegW BNILDI_14340 0.10 -0.3
2,893,711 - yegW BNILDI_14340 0.10 +0.0
2,893,767 + yegW BNILDI_14340 0.18 -1.0
2,893,819 - yegW BNILDI_14340 0.25 -0.7
2,894,074 + yegW BNILDI_14340 0.59 -0.1
2,894,074 + yegW BNILDI_14340 0.59 -0.0
2,894,126 + yegW BNILDI_14340 0.66 +0.2
2,894,188 + yegW BNILDI_14340 0.74 -0.4
2,894,354 + +0.6
2,894,355 - -0.0
2,894,355 - -0.2
2,894,449 + -1.8
2,894,453 - yegV BNILDI_14345 0.10 -0.9
2,894,494 + yegV BNILDI_14345 0.15 -0.3
2,894,534 - yegV BNILDI_14345 0.19 -0.1
2,894,725 + yegV BNILDI_14345 0.39 -0.2
2,894,726 - yegV BNILDI_14345 0.39 +1.7
2,894,755 + yegV BNILDI_14345 0.42 -0.3
2,895,302 - +0.2
2,895,384 + -0.1
2,895,405 + +0.2
2,895,572 + BNILDI_14350 0.26 -0.8
2,895,827 + BNILDI_14350 0.51 -0.0
2,895,828 - BNILDI_14350 0.51 +1.7
2,895,863 + BNILDI_14350 0.55 +0.3
2,895,900 + BNILDI_14350 0.58 +2.3
2,895,901 - BNILDI_14350 0.58 -0.8
2,895,966 - BNILDI_14350 0.65 -0.1
2,896,055 + BNILDI_14350 0.74 +0.2
2,896,058 + BNILDI_14350 0.74 +0.7

Or see this region's nucleotide sequence