Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegX and yegW are separated by 51 nucleotides yegW and yegV overlap by 27 nucleotides yegV and BNILDI_14350 overlap by 4 nucleotides BNILDI_14350 and yegT overlap by 4 nucleotides
BNILDI_14335: yegX - Uncharacterized protein YegX, at 2,892,763 to 2,893,581
yegX
BNILDI_14340: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 2,893,633 to 2,894,379
yegW
BNILDI_14345: yegV - Uncharacterized sugar kinase YegV, at 2,894,353 to 2,895,318
yegV
BNILDI_14350: BNILDI_14350 - Uncharacterized protein YegU, at 2,895,315 to 2,896,319
_14350
BNILDI_14355: yegT - Putative nucleoside transporter YegT, at 2,896,316 to 2,897,593
yegT
Position (kb)
2894
2895
2896 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2893.417 kb on + strand, within yegX at 2893.417 kb on + strand, within yegX at 2893.487 kb on + strand, within yegX at 2893.487 kb on + strand, within yegX at 2893.488 kb on - strand, within yegX at 2893.515 kb on + strand at 2893.520 kb on + strand at 2893.520 kb on + strand at 2893.521 kb on - strand at 2893.596 kb on + strand at 2893.705 kb on + strand at 2893.711 kb on - strand, within yegW at 2893.711 kb on - strand, within yegW at 2893.767 kb on + strand, within yegW at 2893.819 kb on - strand, within yegW at 2894.074 kb on + strand, within yegW at 2894.074 kb on + strand, within yegW at 2894.126 kb on + strand, within yegW at 2894.188 kb on + strand, within yegW at 2894.354 kb on + strand at 2894.355 kb on - strand at 2894.355 kb on - strand at 2894.449 kb on + strand at 2894.453 kb on - strand, within yegV at 2894.494 kb on + strand, within yegV at 2894.534 kb on - strand, within yegV at 2894.725 kb on + strand, within yegV at 2894.726 kb on - strand, within yegV at 2894.755 kb on + strand, within yegV at 2895.302 kb on - strand at 2895.384 kb on + strand at 2895.405 kb on + strand at 2895.572 kb on + strand, within BNILDI_14350 at 2895.827 kb on + strand, within BNILDI_14350 at 2895.828 kb on - strand, within BNILDI_14350 at 2895.863 kb on + strand, within BNILDI_14350 at 2895.900 kb on + strand, within BNILDI_14350 at 2895.901 kb on - strand, within BNILDI_14350 at 2895.966 kb on - strand, within BNILDI_14350 at 2896.055 kb on + strand, within BNILDI_14350 at 2896.058 kb on + strand, within BNILDI_14350
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,893,417 + yegX BNILDI_14335 0.80 +1.3 2,893,417 + yegX BNILDI_14335 0.80 +0.2 2,893,487 + yegX BNILDI_14335 0.88 +0.5 2,893,487 + yegX BNILDI_14335 0.88 -0.7 2,893,488 - yegX BNILDI_14335 0.89 -0.9 2,893,515 + -0.4 2,893,520 + +0.9 2,893,520 + +0.2 2,893,521 - -1.5 2,893,596 + -0.5 2,893,705 + +0.2 2,893,711 - yegW BNILDI_14340 0.10 -0.3 2,893,711 - yegW BNILDI_14340 0.10 +0.0 2,893,767 + yegW BNILDI_14340 0.18 -1.0 2,893,819 - yegW BNILDI_14340 0.25 -0.7 2,894,074 + yegW BNILDI_14340 0.59 -0.1 2,894,074 + yegW BNILDI_14340 0.59 -0.0 2,894,126 + yegW BNILDI_14340 0.66 +0.2 2,894,188 + yegW BNILDI_14340 0.74 -0.4 2,894,354 + +0.6 2,894,355 - -0.0 2,894,355 - -0.2 2,894,449 + -1.8 2,894,453 - yegV BNILDI_14345 0.10 -0.9 2,894,494 + yegV BNILDI_14345 0.15 -0.3 2,894,534 - yegV BNILDI_14345 0.19 -0.1 2,894,725 + yegV BNILDI_14345 0.39 -0.2 2,894,726 - yegV BNILDI_14345 0.39 +1.7 2,894,755 + yegV BNILDI_14345 0.42 -0.3 2,895,302 - +0.2 2,895,384 + -0.1 2,895,405 + +0.2 2,895,572 + BNILDI_14350 0.26 -0.8 2,895,827 + BNILDI_14350 0.51 -0.0 2,895,828 - BNILDI_14350 0.51 +1.7 2,895,863 + BNILDI_14350 0.55 +0.3 2,895,900 + BNILDI_14350 0.58 +2.3 2,895,901 - BNILDI_14350 0.58 -0.8 2,895,966 - BNILDI_14350 0.65 -0.1 2,896,055 + BNILDI_14350 0.74 +0.2 2,896,058 + BNILDI_14350 0.74 +0.7
Or see this region's nucleotide sequence