Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bglX and osmF are separated by 210 nucleotides osmF and yehY are separated by 6 nucleotides
BNILDI_14145: bglX - beta-glucosidase BglX, at 2,851,170 to 2,853,437
bglX
BNILDI_14150: osmF - glycine betaine ABC transporter substrate-binding protein OsmF, at 2,853,648 to 2,854,565
osmF
BNILDI_14155: yehY - glycine betaine ABC transporter permease YehY, at 2,854,572 to 2,855,729
yehY
Position (kb)
2853
2854
2855 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2852.967 kb on + strand, within bglX at 2852.967 kb on + strand, within bglX at 2852.968 kb on - strand, within bglX at 2852.995 kb on - strand, within bglX at 2852.996 kb on + strand, within bglX at 2853.081 kb on + strand, within bglX at 2853.082 kb on - strand, within bglX at 2853.208 kb on - strand, within bglX at 2853.354 kb on + strand at 2853.354 kb on + strand at 2853.382 kb on + strand at 2853.383 kb on - strand at 2853.436 kb on - strand at 2853.443 kb on + strand at 2853.443 kb on + strand at 2853.532 kb on + strand at 2853.532 kb on + strand at 2853.532 kb on + strand at 2853.594 kb on + strand at 2853.683 kb on + strand at 2853.684 kb on - strand at 2853.819 kb on - strand, within osmF at 2853.891 kb on + strand, within osmF at 2853.893 kb on + strand, within osmF at 2854.028 kb on + strand, within osmF at 2854.029 kb on - strand, within osmF at 2854.191 kb on + strand, within osmF at 2854.192 kb on - strand, within osmF at 2854.374 kb on + strand, within osmF at 2854.374 kb on + strand, within osmF at 2854.375 kb on - strand, within osmF at 2854.375 kb on - strand, within osmF at 2854.564 kb on - strand at 2854.564 kb on - strand at 2854.578 kb on + strand at 2854.578 kb on + strand at 2854.579 kb on - strand at 2854.579 kb on - strand at 2854.579 kb on - strand at 2854.583 kb on - strand at 2854.586 kb on + strand at 2854.886 kb on + strand, within yehY at 2854.887 kb on - strand, within yehY at 2854.887 kb on - strand, within yehY at 2854.994 kb on + strand, within yehY at 2855.321 kb on - strand, within yehY at 2855.396 kb on - strand, within yehY at 2855.542 kb on + strand, within yehY at 2855.546 kb on + strand, within yehY
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,852,967 + bglX BNILDI_14145 0.79 +0.5 2,852,967 + bglX BNILDI_14145 0.79 -0.2 2,852,968 - bglX BNILDI_14145 0.79 +0.1 2,852,995 - bglX BNILDI_14145 0.80 -2.0 2,852,996 + bglX BNILDI_14145 0.81 -1.0 2,853,081 + bglX BNILDI_14145 0.84 -0.1 2,853,082 - bglX BNILDI_14145 0.84 -0.2 2,853,208 - bglX BNILDI_14145 0.90 +0.2 2,853,354 + -0.1 2,853,354 + +0.3 2,853,382 + +2.3 2,853,383 - -0.5 2,853,436 - -1.1 2,853,443 + +1.8 2,853,443 + -0.5 2,853,532 + +0.0 2,853,532 + -0.9 2,853,532 + +0.2 2,853,594 + +0.2 2,853,683 + -0.2 2,853,684 - -0.7 2,853,819 - osmF BNILDI_14150 0.19 -0.7 2,853,891 + osmF BNILDI_14150 0.26 +0.1 2,853,893 + osmF BNILDI_14150 0.27 -1.0 2,854,028 + osmF BNILDI_14150 0.41 +0.1 2,854,029 - osmF BNILDI_14150 0.42 -2.4 2,854,191 + osmF BNILDI_14150 0.59 +0.9 2,854,192 - osmF BNILDI_14150 0.59 +0.9 2,854,374 + osmF BNILDI_14150 0.79 +0.1 2,854,374 + osmF BNILDI_14150 0.79 -2.1 2,854,375 - osmF BNILDI_14150 0.79 -0.3 2,854,375 - osmF BNILDI_14150 0.79 -0.6 2,854,564 - +0.8 2,854,564 - +0.3 2,854,578 + +0.1 2,854,578 + +0.2 2,854,579 - -0.2 2,854,579 - +1.3 2,854,579 - +0.7 2,854,583 - -0.4 2,854,586 + -0.6 2,854,886 + yehY BNILDI_14155 0.27 +1.4 2,854,887 - yehY BNILDI_14155 0.27 +0.7 2,854,887 - yehY BNILDI_14155 0.27 -0.3 2,854,994 + yehY BNILDI_14155 0.36 -0.1 2,855,321 - yehY BNILDI_14155 0.65 +0.8 2,855,396 - yehY BNILDI_14155 0.71 +0.3 2,855,542 + yehY BNILDI_14155 0.84 +0.2 2,855,546 + yehY BNILDI_14155 0.84 +0.2
Or see this region's nucleotide sequence