Strain Fitness in Escherichia coli ECRC62 around BNILDI_14150

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbglX and osmF are separated by 210 nucleotidesosmF and yehY are separated by 6 nucleotides BNILDI_14145: bglX - beta-glucosidase BglX, at 2,851,170 to 2,853,437 bglX BNILDI_14150: osmF - glycine betaine ABC transporter substrate-binding protein OsmF, at 2,853,648 to 2,854,565 osmF BNILDI_14155: yehY - glycine betaine ABC transporter permease YehY, at 2,854,572 to 2,855,729 yehY Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -2 -1 0 1 2at 2852.967 kb on + strand, within bglXat 2852.967 kb on + strand, within bglXat 2852.968 kb on - strand, within bglXat 2852.995 kb on - strand, within bglXat 2852.996 kb on + strand, within bglXat 2853.081 kb on + strand, within bglXat 2853.082 kb on - strand, within bglXat 2853.208 kb on - strand, within bglXat 2853.354 kb on + strandat 2853.354 kb on + strandat 2853.382 kb on + strandat 2853.383 kb on - strandat 2853.436 kb on - strandat 2853.443 kb on + strandat 2853.443 kb on + strandat 2853.532 kb on + strandat 2853.532 kb on + strandat 2853.532 kb on + strandat 2853.594 kb on + strandat 2853.683 kb on + strandat 2853.684 kb on - strandat 2853.819 kb on - strand, within osmFat 2853.891 kb on + strand, within osmFat 2853.893 kb on + strand, within osmFat 2854.028 kb on + strand, within osmFat 2854.029 kb on - strand, within osmFat 2854.191 kb on + strand, within osmFat 2854.192 kb on - strand, within osmFat 2854.374 kb on + strand, within osmFat 2854.374 kb on + strand, within osmFat 2854.375 kb on - strand, within osmFat 2854.375 kb on - strand, within osmFat 2854.564 kb on - strandat 2854.564 kb on - strandat 2854.578 kb on + strandat 2854.578 kb on + strandat 2854.579 kb on - strandat 2854.579 kb on - strandat 2854.579 kb on - strandat 2854.583 kb on - strandat 2854.586 kb on + strandat 2854.886 kb on + strand, within yehYat 2854.887 kb on - strand, within yehYat 2854.887 kb on - strand, within yehYat 2854.994 kb on + strand, within yehYat 2855.321 kb on - strand, within yehYat 2855.396 kb on - strand, within yehYat 2855.542 kb on + strand, within yehYat 2855.546 kb on + strand, within yehY

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,852,967 + bglX BNILDI_14145 0.79 +0.5
2,852,967 + bglX BNILDI_14145 0.79 -0.2
2,852,968 - bglX BNILDI_14145 0.79 +0.1
2,852,995 - bglX BNILDI_14145 0.80 -2.0
2,852,996 + bglX BNILDI_14145 0.81 -1.0
2,853,081 + bglX BNILDI_14145 0.84 -0.1
2,853,082 - bglX BNILDI_14145 0.84 -0.2
2,853,208 - bglX BNILDI_14145 0.90 +0.2
2,853,354 + -0.1
2,853,354 + +0.3
2,853,382 + +2.3
2,853,383 - -0.5
2,853,436 - -1.1
2,853,443 + +1.8
2,853,443 + -0.5
2,853,532 + +0.0
2,853,532 + -0.9
2,853,532 + +0.2
2,853,594 + +0.2
2,853,683 + -0.2
2,853,684 - -0.7
2,853,819 - osmF BNILDI_14150 0.19 -0.7
2,853,891 + osmF BNILDI_14150 0.26 +0.1
2,853,893 + osmF BNILDI_14150 0.27 -1.0
2,854,028 + osmF BNILDI_14150 0.41 +0.1
2,854,029 - osmF BNILDI_14150 0.42 -2.4
2,854,191 + osmF BNILDI_14150 0.59 +0.9
2,854,192 - osmF BNILDI_14150 0.59 +0.9
2,854,374 + osmF BNILDI_14150 0.79 +0.1
2,854,374 + osmF BNILDI_14150 0.79 -2.1
2,854,375 - osmF BNILDI_14150 0.79 -0.3
2,854,375 - osmF BNILDI_14150 0.79 -0.6
2,854,564 - +0.8
2,854,564 - +0.3
2,854,578 + +0.1
2,854,578 + +0.2
2,854,579 - -0.2
2,854,579 - +1.3
2,854,579 - +0.7
2,854,583 - -0.4
2,854,586 + -0.6
2,854,886 + yehY BNILDI_14155 0.27 +1.4
2,854,887 - yehY BNILDI_14155 0.27 +0.7
2,854,887 - yehY BNILDI_14155 0.27 -0.3
2,854,994 + yehY BNILDI_14155 0.36 -0.1
2,855,321 - yehY BNILDI_14155 0.65 +0.8
2,855,396 - yehY BNILDI_14155 0.71 +0.3
2,855,542 + yehY BNILDI_14155 0.84 +0.2
2,855,546 + yehY BNILDI_14155 0.84 +0.2

Or see this region's nucleotide sequence