Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt srlB and srlE are separated by 10 nucleotides srlE and srlA overlap by 4 nucleotides srlA and mltB are separated by 150 nucleotides
BNILDI_11080: srlB - PTS glucitol/sorbitol transporter subunit IIA, at 2,239,660 to 2,240,031
srlB
BNILDI_11085: srlE - PTS glucitol/sorbitol transporter subunit IIB, at 2,240,042 to 2,241,001
srlE
BNILDI_11090: srlA - PTS glucitol/sorbitol transporter subunit IIC, at 2,240,998 to 2,241,561
srlA
BNILDI_11095: mltB - lytic murein transglycosylase B, at 2,241,712 to 2,242,902
mltB
Position (kb)
2240
2241
2242 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2240.023 kb on - strand at 2240.044 kb on - strand at 2240.100 kb on - strand at 2240.225 kb on + strand, within srlE at 2240.226 kb on - strand, within srlE at 2240.428 kb on + strand, within srlE at 2240.484 kb on - strand, within srlE at 2240.561 kb on + strand, within srlE at 2240.602 kb on - strand, within srlE at 2240.679 kb on + strand, within srlE at 2240.679 kb on + strand, within srlE at 2240.735 kb on - strand, within srlE at 2240.737 kb on + strand, within srlE at 2240.738 kb on - strand, within srlE at 2240.866 kb on + strand, within srlE at 2240.916 kb on + strand at 2240.917 kb on - strand at 2240.917 kb on - strand at 2241.126 kb on - strand, within srlA at 2241.126 kb on - strand, within srlA at 2241.126 kb on - strand, within srlA at 2241.188 kb on + strand, within srlA at 2241.188 kb on + strand, within srlA at 2241.246 kb on + strand, within srlA at 2241.246 kb on + strand, within srlA at 2241.246 kb on + strand, within srlA at 2241.246 kb on + strand, within srlA at 2241.247 kb on - strand, within srlA at 2241.247 kb on - strand, within srlA at 2241.248 kb on + strand, within srlA at 2241.266 kb on + strand, within srlA at 2241.267 kb on - strand, within srlA at 2241.267 kb on - strand, within srlA at 2241.307 kb on + strand, within srlA at 2241.308 kb on - strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.355 kb on + strand, within srlA at 2241.356 kb on - strand, within srlA at 2241.356 kb on - strand, within srlA at 2241.356 kb on - strand, within srlA at 2241.546 kb on + strand at 2241.556 kb on + strand at 2241.556 kb on + strand at 2241.557 kb on - strand at 2241.718 kb on + strand at 2241.723 kb on - strand at 2241.780 kb on + strand at 2241.781 kb on - strand at 2241.781 kb on - strand at 2241.781 kb on - strand at 2241.804 kb on - strand at 2241.832 kb on + strand, within mltB at 2241.836 kb on + strand, within mltB at 2241.837 kb on - strand, within mltB at 2241.892 kb on - strand, within mltB at 2242.278 kb on + strand, within mltB at 2242.365 kb on + strand, within mltB at 2242.366 kb on - strand, within mltB at 2242.370 kb on - strand, within mltB at 2242.387 kb on + strand, within mltB at 2242.494 kb on + strand, within mltB at 2242.516 kb on + strand, within mltB at 2242.516 kb on + strand, within mltB at 2242.517 kb on - strand, within mltB at 2242.545 kb on + strand, within mltB at 2242.545 kb on + strand, within mltB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,240,023 - +1.7 2,240,044 - -0.2 2,240,100 - +1.7 2,240,225 + srlE BNILDI_11085 0.19 -3.9 2,240,226 - srlE BNILDI_11085 0.19 +1.5 2,240,428 + srlE BNILDI_11085 0.40 -1.0 2,240,484 - srlE BNILDI_11085 0.46 +0.2 2,240,561 + srlE BNILDI_11085 0.54 +0.2 2,240,602 - srlE BNILDI_11085 0.58 +0.8 2,240,679 + srlE BNILDI_11085 0.66 -0.2 2,240,679 + srlE BNILDI_11085 0.66 +0.2 2,240,735 - srlE BNILDI_11085 0.72 -0.0 2,240,737 + srlE BNILDI_11085 0.72 -0.7 2,240,738 - srlE BNILDI_11085 0.72 -0.4 2,240,866 + srlE BNILDI_11085 0.86 +0.0 2,240,916 + +0.4 2,240,917 - +0.9 2,240,917 - +0.1 2,241,126 - srlA BNILDI_11090 0.23 +2.8 2,241,126 - srlA BNILDI_11090 0.23 -0.6 2,241,126 - srlA BNILDI_11090 0.23 -1.1 2,241,188 + srlA BNILDI_11090 0.34 -0.6 2,241,188 + srlA BNILDI_11090 0.34 +1.3 2,241,246 + srlA BNILDI_11090 0.44 -1.3 2,241,246 + srlA BNILDI_11090 0.44 -0.4 2,241,246 + srlA BNILDI_11090 0.44 +0.2 2,241,246 + srlA BNILDI_11090 0.44 +0.8 2,241,247 - srlA BNILDI_11090 0.44 -0.0 2,241,247 - srlA BNILDI_11090 0.44 +0.6 2,241,248 + srlA BNILDI_11090 0.44 +0.5 2,241,266 + srlA BNILDI_11090 0.48 -0.1 2,241,267 - srlA BNILDI_11090 0.48 +0.2 2,241,267 - srlA BNILDI_11090 0.48 -0.5 2,241,307 + srlA BNILDI_11090 0.55 +0.9 2,241,308 - srlA BNILDI_11090 0.55 +0.3 2,241,355 + srlA BNILDI_11090 0.63 -0.8 2,241,355 + srlA BNILDI_11090 0.63 -1.0 2,241,355 + srlA BNILDI_11090 0.63 +0.0 2,241,355 + srlA BNILDI_11090 0.63 +0.1 2,241,355 + srlA BNILDI_11090 0.63 +0.4 2,241,355 + srlA BNILDI_11090 0.63 +0.1 2,241,355 + srlA BNILDI_11090 0.63 -0.6 2,241,356 - srlA BNILDI_11090 0.63 +0.5 2,241,356 - srlA BNILDI_11090 0.63 -0.5 2,241,356 - srlA BNILDI_11090 0.63 -1.0 2,241,546 + -0.0 2,241,556 + +0.8 2,241,556 + +1.9 2,241,557 - -0.8 2,241,718 + -0.2 2,241,723 - +1.0 2,241,780 + -0.2 2,241,781 - -1.1 2,241,781 - +0.6 2,241,781 - +0.1 2,241,804 - -0.8 2,241,832 + mltB BNILDI_11095 0.10 -0.1 2,241,836 + mltB BNILDI_11095 0.10 -0.7 2,241,837 - mltB BNILDI_11095 0.10 +0.3 2,241,892 - mltB BNILDI_11095 0.15 -0.7 2,242,278 + mltB BNILDI_11095 0.48 +0.4 2,242,365 + mltB BNILDI_11095 0.55 -3.1 2,242,366 - mltB BNILDI_11095 0.55 +0.8 2,242,370 - mltB BNILDI_11095 0.55 +0.5 2,242,387 + mltB BNILDI_11095 0.57 +0.1 2,242,494 + mltB BNILDI_11095 0.66 +0.1 2,242,516 + mltB BNILDI_11095 0.68 -1.4 2,242,516 + mltB BNILDI_11095 0.68 +1.0 2,242,517 - mltB BNILDI_11095 0.68 -0.1 2,242,545 + mltB BNILDI_11095 0.70 +0.2 2,242,545 + mltB BNILDI_11095 0.70 -0.1
Or see this region's nucleotide sequence