Strain Fitness in Escherichia coli ECRC62 around BNILDI_11090

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsrlB and srlE are separated by 10 nucleotidessrlE and srlA overlap by 4 nucleotidessrlA and mltB are separated by 150 nucleotides BNILDI_11080: srlB - PTS glucitol/sorbitol transporter subunit IIA, at 2,239,660 to 2,240,031 srlB BNILDI_11085: srlE - PTS glucitol/sorbitol transporter subunit IIB, at 2,240,042 to 2,241,001 srlE BNILDI_11090: srlA - PTS glucitol/sorbitol transporter subunit IIC, at 2,240,998 to 2,241,561 srlA BNILDI_11095: mltB - lytic murein transglycosylase B, at 2,241,712 to 2,242,902 mltB Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2240.023 kb on - strandat 2240.044 kb on - strandat 2240.100 kb on - strandat 2240.225 kb on + strand, within srlEat 2240.226 kb on - strand, within srlEat 2240.428 kb on + strand, within srlEat 2240.484 kb on - strand, within srlEat 2240.561 kb on + strand, within srlEat 2240.602 kb on - strand, within srlEat 2240.679 kb on + strand, within srlEat 2240.679 kb on + strand, within srlEat 2240.735 kb on - strand, within srlEat 2240.737 kb on + strand, within srlEat 2240.738 kb on - strand, within srlEat 2240.866 kb on + strand, within srlEat 2240.916 kb on + strandat 2240.917 kb on - strandat 2240.917 kb on - strandat 2241.126 kb on - strand, within srlAat 2241.126 kb on - strand, within srlAat 2241.126 kb on - strand, within srlAat 2241.188 kb on + strand, within srlAat 2241.188 kb on + strand, within srlAat 2241.246 kb on + strand, within srlAat 2241.246 kb on + strand, within srlAat 2241.246 kb on + strand, within srlAat 2241.246 kb on + strand, within srlAat 2241.247 kb on - strand, within srlAat 2241.247 kb on - strand, within srlAat 2241.248 kb on + strand, within srlAat 2241.266 kb on + strand, within srlAat 2241.267 kb on - strand, within srlAat 2241.267 kb on - strand, within srlAat 2241.307 kb on + strand, within srlAat 2241.308 kb on - strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.355 kb on + strand, within srlAat 2241.356 kb on - strand, within srlAat 2241.356 kb on - strand, within srlAat 2241.356 kb on - strand, within srlAat 2241.546 kb on + strandat 2241.556 kb on + strandat 2241.556 kb on + strandat 2241.557 kb on - strandat 2241.718 kb on + strandat 2241.723 kb on - strandat 2241.780 kb on + strandat 2241.781 kb on - strandat 2241.781 kb on - strandat 2241.781 kb on - strandat 2241.804 kb on - strandat 2241.832 kb on + strand, within mltBat 2241.836 kb on + strand, within mltBat 2241.837 kb on - strand, within mltBat 2241.892 kb on - strand, within mltBat 2242.278 kb on + strand, within mltBat 2242.365 kb on + strand, within mltBat 2242.366 kb on - strand, within mltBat 2242.370 kb on - strand, within mltBat 2242.387 kb on + strand, within mltBat 2242.494 kb on + strand, within mltBat 2242.516 kb on + strand, within mltBat 2242.516 kb on + strand, within mltBat 2242.517 kb on - strand, within mltBat 2242.545 kb on + strand, within mltBat 2242.545 kb on + strand, within mltB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
2,240,023 - +1.7
2,240,044 - -0.2
2,240,100 - +1.7
2,240,225 + srlE BNILDI_11085 0.19 -3.9
2,240,226 - srlE BNILDI_11085 0.19 +1.5
2,240,428 + srlE BNILDI_11085 0.40 -1.0
2,240,484 - srlE BNILDI_11085 0.46 +0.2
2,240,561 + srlE BNILDI_11085 0.54 +0.2
2,240,602 - srlE BNILDI_11085 0.58 +0.8
2,240,679 + srlE BNILDI_11085 0.66 -0.2
2,240,679 + srlE BNILDI_11085 0.66 +0.2
2,240,735 - srlE BNILDI_11085 0.72 -0.0
2,240,737 + srlE BNILDI_11085 0.72 -0.7
2,240,738 - srlE BNILDI_11085 0.72 -0.4
2,240,866 + srlE BNILDI_11085 0.86 +0.0
2,240,916 + +0.4
2,240,917 - +0.9
2,240,917 - +0.1
2,241,126 - srlA BNILDI_11090 0.23 +2.8
2,241,126 - srlA BNILDI_11090 0.23 -0.6
2,241,126 - srlA BNILDI_11090 0.23 -1.1
2,241,188 + srlA BNILDI_11090 0.34 -0.6
2,241,188 + srlA BNILDI_11090 0.34 +1.3
2,241,246 + srlA BNILDI_11090 0.44 -1.3
2,241,246 + srlA BNILDI_11090 0.44 -0.4
2,241,246 + srlA BNILDI_11090 0.44 +0.2
2,241,246 + srlA BNILDI_11090 0.44 +0.8
2,241,247 - srlA BNILDI_11090 0.44 -0.0
2,241,247 - srlA BNILDI_11090 0.44 +0.6
2,241,248 + srlA BNILDI_11090 0.44 +0.5
2,241,266 + srlA BNILDI_11090 0.48 -0.1
2,241,267 - srlA BNILDI_11090 0.48 +0.2
2,241,267 - srlA BNILDI_11090 0.48 -0.5
2,241,307 + srlA BNILDI_11090 0.55 +0.9
2,241,308 - srlA BNILDI_11090 0.55 +0.3
2,241,355 + srlA BNILDI_11090 0.63 -0.8
2,241,355 + srlA BNILDI_11090 0.63 -1.0
2,241,355 + srlA BNILDI_11090 0.63 +0.0
2,241,355 + srlA BNILDI_11090 0.63 +0.1
2,241,355 + srlA BNILDI_11090 0.63 +0.4
2,241,355 + srlA BNILDI_11090 0.63 +0.1
2,241,355 + srlA BNILDI_11090 0.63 -0.6
2,241,356 - srlA BNILDI_11090 0.63 +0.5
2,241,356 - srlA BNILDI_11090 0.63 -0.5
2,241,356 - srlA BNILDI_11090 0.63 -1.0
2,241,546 + -0.0
2,241,556 + +0.8
2,241,556 + +1.9
2,241,557 - -0.8
2,241,718 + -0.2
2,241,723 - +1.0
2,241,780 + -0.2
2,241,781 - -1.1
2,241,781 - +0.6
2,241,781 - +0.1
2,241,804 - -0.8
2,241,832 + mltB BNILDI_11095 0.10 -0.1
2,241,836 + mltB BNILDI_11095 0.10 -0.7
2,241,837 - mltB BNILDI_11095 0.10 +0.3
2,241,892 - mltB BNILDI_11095 0.15 -0.7
2,242,278 + mltB BNILDI_11095 0.48 +0.4
2,242,365 + mltB BNILDI_11095 0.55 -3.1
2,242,366 - mltB BNILDI_11095 0.55 +0.8
2,242,370 - mltB BNILDI_11095 0.55 +0.5
2,242,387 + mltB BNILDI_11095 0.57 +0.1
2,242,494 + mltB BNILDI_11095 0.66 +0.1
2,242,516 + mltB BNILDI_11095 0.68 -1.4
2,242,516 + mltB BNILDI_11095 0.68 +1.0
2,242,517 - mltB BNILDI_11095 0.68 -0.1
2,242,545 + mltB BNILDI_11095 0.70 +0.2
2,242,545 + mltB BNILDI_11095 0.70 -0.1

Or see this region's nucleotide sequence