Strain Fitness in Escherichia coli ECRC62 around BNILDI_10470

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttssB and fMet_trna are separated by 633 nucleotidesfMet_trna and fMet_trna are separated by 33 nucleotidesfMet_trna and fMet_trna are separated by 33 nucleotidesfMet_trna and mltA are separated by 208 nucleotides BNILDI_10455: tssB - type VI secretion system contractile sheath small subunit, at 2,112,939 to 2,113,439 tssB BNILDI_10460: fMet_trna - tRNA-fMet(cat), at 2,114,073 to 2,114,149 _trna BNILDI_10465: fMet_trna - tRNA-fMet(cat), at 2,114,183 to 2,114,259 _trna BNILDI_10470: fMet_trna - tRNA-fMet(cat), at 2,114,293 to 2,114,369 _trna BNILDI_10475: mltA - murein transglycosylase A, at 2,114,578 to 2,115,675 mltA Position (kb) 2114 2115Strain fitness (log2 ratio) -1 0 1 2 3at 2113.318 kb on + strand, within tssBat 2113.377 kb on - strand, within tssBat 2113.398 kb on + strandat 2113.670 kb on + strandat 2113.921 kb on + strandat 2113.931 kb on - strandat 2114.037 kb on - strandat 2114.275 kb on - strandat 2114.386 kb on - strandat 2114.467 kb on - strandat 2114.595 kb on - strandat 2114.599 kb on + strandat 2114.599 kb on + strandat 2114.607 kb on + strandat 2114.671 kb on + strandat 2114.674 kb on - strandat 2114.674 kb on - strandat 2114.674 kb on - strandat 2114.767 kb on - strand, within mltAat 2114.818 kb on + strand, within mltAat 2114.818 kb on + strand, within mltAat 2114.818 kb on + strand, within mltAat 2114.819 kb on - strand, within mltAat 2114.865 kb on + strand, within mltAat 2114.914 kb on + strand, within mltAat 2114.942 kb on - strand, within mltAat 2115.046 kb on + strand, within mltAat 2115.071 kb on - strand, within mltAat 2115.073 kb on - strand, within mltAat 2115.102 kb on + strand, within mltAat 2115.176 kb on - strand, within mltAat 2115.214 kb on - strand, within mltAat 2115.214 kb on - strand, within mltAat 2115.214 kb on - strand, within mltA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,113,318 + tssB BNILDI_10455 0.76 +0.5
2,113,377 - tssB BNILDI_10455 0.87 +0.3
2,113,398 + -0.5
2,113,670 + +0.4
2,113,921 + +1.3
2,113,931 - +1.6
2,114,037 - -0.5
2,114,275 - +1.1
2,114,386 - +0.3
2,114,467 - +0.0
2,114,595 - +0.7
2,114,599 + +0.4
2,114,599 + +1.0
2,114,607 + +0.0
2,114,671 + +0.1
2,114,674 - +3.4
2,114,674 - -1.2
2,114,674 - +0.8
2,114,767 - mltA BNILDI_10475 0.17 -1.2
2,114,818 + mltA BNILDI_10475 0.22 +0.2
2,114,818 + mltA BNILDI_10475 0.22 +0.2
2,114,818 + mltA BNILDI_10475 0.22 -0.4
2,114,819 - mltA BNILDI_10475 0.22 -0.4
2,114,865 + mltA BNILDI_10475 0.26 -0.2
2,114,914 + mltA BNILDI_10475 0.31 +0.2
2,114,942 - mltA BNILDI_10475 0.33 +0.6
2,115,046 + mltA BNILDI_10475 0.43 -0.7
2,115,071 - mltA BNILDI_10475 0.45 -0.2
2,115,073 - mltA BNILDI_10475 0.45 -0.5
2,115,102 + mltA BNILDI_10475 0.48 -0.2
2,115,176 - mltA BNILDI_10475 0.54 -0.0
2,115,214 - mltA BNILDI_10475 0.58 -0.4
2,115,214 - mltA BNILDI_10475 0.58 -0.2
2,115,214 - mltA BNILDI_10475 0.58 +0.3

Or see this region's nucleotide sequence