Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssB and fMet_trna are separated by 633 nucleotides fMet_trna and fMet_trna are separated by 33 nucleotides fMet_trna and fMet_trna are separated by 33 nucleotides fMet_trna and mltA are separated by 208 nucleotides
BNILDI_10455: tssB - type VI secretion system contractile sheath small subunit, at 2,112,939 to 2,113,439
tssB
BNILDI_10460: fMet_trna - tRNA-fMet(cat), at 2,114,073 to 2,114,149
_trna
BNILDI_10465: fMet_trna - tRNA-fMet(cat), at 2,114,183 to 2,114,259
_trna
BNILDI_10470: fMet_trna - tRNA-fMet(cat), at 2,114,293 to 2,114,369
_trna
BNILDI_10475: mltA - murein transglycosylase A, at 2,114,578 to 2,115,675
mltA
Position (kb)
2114
2115 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2113.318 kb on + strand, within tssB at 2113.377 kb on - strand, within tssB at 2113.398 kb on + strand at 2113.670 kb on + strand at 2113.921 kb on + strand at 2113.931 kb on - strand at 2114.037 kb on - strand at 2114.275 kb on - strand at 2114.386 kb on - strand at 2114.467 kb on - strand at 2114.595 kb on - strand at 2114.599 kb on + strand at 2114.599 kb on + strand at 2114.607 kb on + strand at 2114.671 kb on + strand at 2114.674 kb on - strand at 2114.674 kb on - strand at 2114.674 kb on - strand at 2114.767 kb on - strand, within mltA at 2114.818 kb on + strand, within mltA at 2114.818 kb on + strand, within mltA at 2114.818 kb on + strand, within mltA at 2114.819 kb on - strand, within mltA at 2114.865 kb on + strand, within mltA at 2114.914 kb on + strand, within mltA at 2114.942 kb on - strand, within mltA at 2115.046 kb on + strand, within mltA at 2115.071 kb on - strand, within mltA at 2115.073 kb on - strand, within mltA at 2115.102 kb on + strand, within mltA at 2115.176 kb on - strand, within mltA at 2115.214 kb on - strand, within mltA at 2115.214 kb on - strand, within mltA at 2115.214 kb on - strand, within mltA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,113,318 + tssB BNILDI_10455 0.76 +0.5 2,113,377 - tssB BNILDI_10455 0.87 +0.3 2,113,398 + -0.5 2,113,670 + +0.4 2,113,921 + +1.3 2,113,931 - +1.6 2,114,037 - -0.5 2,114,275 - +1.1 2,114,386 - +0.3 2,114,467 - +0.0 2,114,595 - +0.7 2,114,599 + +0.4 2,114,599 + +1.0 2,114,607 + +0.0 2,114,671 + +0.1 2,114,674 - +3.4 2,114,674 - -1.2 2,114,674 - +0.8 2,114,767 - mltA BNILDI_10475 0.17 -1.2 2,114,818 + mltA BNILDI_10475 0.22 +0.2 2,114,818 + mltA BNILDI_10475 0.22 +0.2 2,114,818 + mltA BNILDI_10475 0.22 -0.4 2,114,819 - mltA BNILDI_10475 0.22 -0.4 2,114,865 + mltA BNILDI_10475 0.26 -0.2 2,114,914 + mltA BNILDI_10475 0.31 +0.2 2,114,942 - mltA BNILDI_10475 0.33 +0.6 2,115,046 + mltA BNILDI_10475 0.43 -0.7 2,115,071 - mltA BNILDI_10475 0.45 -0.2 2,115,073 - mltA BNILDI_10475 0.45 -0.5 2,115,102 + mltA BNILDI_10475 0.48 -0.2 2,115,176 - mltA BNILDI_10475 0.54 -0.0 2,115,214 - mltA BNILDI_10475 0.58 -0.4 2,115,214 - mltA BNILDI_10475 0.58 -0.2 2,115,214 - mltA BNILDI_10475 0.58 +0.3
Or see this region's nucleotide sequence