Strain Fitness in Escherichia coli ECRC62 around BNILDI_10270

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and BNILDI_10265 overlap by 4 nucleotidesBNILDI_10265 and yqeH are separated by 46 nucleotidesyqeH and yqeG are separated by 459 nucleotides BNILDI_10260: tnp-IS3 - IS3 family transposase, at 2,066,604 to 2,067,470 tnp-IS3 BNILDI_10265: BNILDI_10265 - IS3 family transposase, at 2,067,467 to 2,067,766 _10265 BNILDI_10270: yqeH - Uncharacterized protein YqeH, at 2,067,813 to 2,068,382 yqeH BNILDI_10275: yqeG - Inner membrane transport protein YqeG, at 2,068,842 to 2,070,071 yqeG Position (kb) 2067 2068 2069Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2067.832 kb on + strandat 2067.851 kb on + strandat 2067.928 kb on - strand, within yqeHat 2068.344 kb on - strandat 2068.352 kb on + strandat 2068.499 kb on + strandat 2068.593 kb on + strandat 2068.608 kb on - strandat 2068.620 kb on - strandat 2068.620 kb on - strandat 2068.680 kb on - strandat 2068.680 kb on - strandat 2068.690 kb on - strandat 2068.743 kb on - strandat 2068.848 kb on - strandat 2068.950 kb on - strandat 2068.965 kb on + strand, within yqeGat 2069.060 kb on + strand, within yqeGat 2069.061 kb on - strand, within yqeGat 2069.061 kb on - strand, within yqeGat 2069.061 kb on - strand, within yqeGat 2069.112 kb on + strand, within yqeGat 2069.191 kb on - strand, within yqeGat 2069.243 kb on + strand, within yqeGat 2069.338 kb on - strand, within yqeGat 2069.344 kb on - strand, within yqeG

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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2,067,832 + -0.1
2,067,851 + -0.4
2,067,928 - yqeH BNILDI_10270 0.20 -0.5
2,068,344 - -2.8
2,068,352 + -2.1
2,068,499 + -0.0
2,068,593 + -0.1
2,068,608 - -1.7
2,068,620 - -1.4
2,068,620 - -0.3
2,068,680 - +0.2
2,068,680 - -3.8
2,068,690 - -0.6
2,068,743 - +0.4
2,068,848 - +0.1
2,068,950 - +2.3
2,068,965 + yqeG BNILDI_10275 0.10 -2.3
2,069,060 + yqeG BNILDI_10275 0.18 +2.0
2,069,061 - yqeG BNILDI_10275 0.18 +0.6
2,069,061 - yqeG BNILDI_10275 0.18 -0.2
2,069,061 - yqeG BNILDI_10275 0.18 +0.1
2,069,112 + yqeG BNILDI_10275 0.22 +0.5
2,069,191 - yqeG BNILDI_10275 0.28 -1.1
2,069,243 + yqeG BNILDI_10275 0.33 -1.5
2,069,338 - yqeG BNILDI_10275 0.40 +2.0
2,069,344 - yqeG BNILDI_10275 0.41 +0.0

Or see this region's nucleotide sequence