Strain Fitness in Escherichia coli ECRC62 around BNILDI_09145

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispU and BNILDI_09140 overlap by 1 nucleotidesBNILDI_09140 and cdsA overlap by 32 nucleotidescdsA and rseP are separated by 11 nucleotides BNILDI_09135: ispU - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 1,832,540 to 1,833,298 ispU BNILDI_09140: BNILDI_09140 - Phosphatidate cytidylyltransferase, at 1,833,298 to 1,833,450 _09140 BNILDI_09145: cdsA - phosphatidate cytidylyltransferase, at 1,833,419 to 1,834,168 cdsA BNILDI_09150: rseP - sigma E protease regulator RseP, at 1,834,180 to 1,835,532 rseP Position (kb) 1833 1834 1835Strain fitness (log2 ratio) -2 -1 0 1at 1832.431 kb on + strandat 1832.441 kb on + strandat 1832.485 kb on + strandat 1832.485 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,832,431 + -1.8
1,832,441 + +0.0
1,832,485 + -0.7
1,832,485 + -0.3

Or see this region's nucleotide sequence