Strain Fitness in Escherichia coli ECRC62 around BNILDI_06865

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,372,171	+				+0.1
1,372,171	+				-3.2
1,372,183	+				-0.3
1,372,184	-				+0.3
1,372,188	+				-0.3
1,372,188	+				+0.1
1,372,192	+				-0.5
1,372,235	+	sugE	BNILDI_06855	0.20	-0.3
1,372,270	+	sugE	BNILDI_06855	0.31	-1.0
1,372,271	-	sugE	BNILDI_06855	0.31	-0.5
1,372,346	+	sugE	BNILDI_06855	0.55	-0.2
1,372,452	+	sugE	BNILDI_06855	0.88	-1.3
1,372,453	-	sugE	BNILDI_06855	0.88	+0.0
1,372,463	-				-0.5
1,372,512	+				-0.3
1,372,512	+				-0.1
1,372,674	-	blc	BNILDI_06860	0.35	+0.1
1,372,683	-	blc	BNILDI_06860	0.37	+0.4
1,372,784	+	blc	BNILDI_06860	0.56	+0.1
1,372,785	-	blc	BNILDI_06860	0.56	-0.6
1,372,785	-	blc	BNILDI_06860	0.56	+0.1
1,372,791	+	blc	BNILDI_06860	0.57	+0.5
1,372,829	+	blc	BNILDI_06860	0.64	-0.2
1,372,829	+	blc	BNILDI_06860	0.64	+0.3
1,372,829	+	blc	BNILDI_06860	0.64	+0.7
1,372,931	-	blc	BNILDI_06860	0.83	+0.1
1,373,020	-				-0.1
1,373,051	+				+0.8
1,373,052	-				-0.1
1,373,186	+				-0.6
1,373,187	-				-0.0
1,373,188	+				-1.0
1,373,188	+				+0.2
1,373,221	-				-0.1
1,373,221	-				-1.5
1,373,221	-				-0.8
1,373,255	+	blaEC	BNILDI_06865	0.13	-0.4
1,373,256	-	blaEC	BNILDI_06865	0.13	-1.2
1,373,301	-	blaEC	BNILDI_06865	0.17	+0.7
1,373,397	+	blaEC	BNILDI_06865	0.25	-0.3
1,373,599	-	blaEC	BNILDI_06865	0.43	+1.5
1,373,621	+	blaEC	BNILDI_06865	0.45	+1.1
1,373,622	-	blaEC	BNILDI_06865	0.45	+0.0
1,373,635	+	blaEC	BNILDI_06865	0.46	-3.3
1,373,635	+	blaEC	BNILDI_06865	0.46	+0.7
1,373,635	+	blaEC	BNILDI_06865	0.46	-0.4
1,373,636	-	blaEC	BNILDI_06865	0.47	-0.2
1,373,636	-	blaEC	BNILDI_06865	0.47	+0.2
1,373,636	-	blaEC	BNILDI_06865	0.47	-1.3
1,373,745	+	blaEC	BNILDI_06865	0.56	+0.2
1,373,746	-	blaEC	BNILDI_06865	0.56	-0.4
1,373,873	+	blaEC	BNILDI_06865	0.67	-0.7
1,373,873	+	blaEC	BNILDI_06865	0.67	-0.3
1,373,874	-	blaEC	BNILDI_06865	0.68	-0.4
1,373,874	-	blaEC	BNILDI_06865	0.68	+0.2
1,373,874	-	blaEC	BNILDI_06865	0.68	-0.1
1,373,874	-	blaEC	BNILDI_06865	0.68	-1.6
1,373,876	+	blaEC	BNILDI_06865	0.68	-0.0
1,373,877	-	blaEC	BNILDI_06865	0.68	+0.1
1,373,940	-	blaEC	BNILDI_06865	0.73	-0.1
1,374,075	+	blaEC	BNILDI_06865	0.85	-0.8
1,374,075	+	blaEC	BNILDI_06865	0.85	-0.3
1,374,076	-	blaEC	BNILDI_06865	0.85	-0.8
1,374,076	-	blaEC	BNILDI_06865	0.85	-0.2
1,374,079	-	blaEC	BNILDI_06865	0.86	+0.0
1,374,134	+				+0.0
1,374,135	-				-1.3
1,374,145	+				+0.0
1,374,146	-				-0.1
1,374,164	-				+0.6
1,374,209	-				-2.4
1,374,212	+				+0.2
1,374,212	+				-0.0
1,374,212	+				+0.3
1,374,241	+				-2.9
1,374,241	+				+0.1
1,374,241	+				+0.7
1,374,242	-				+0.2
1,374,242	-				-4.8
1,374,242	-				+0.1
1,374,242	-				-0.5
1,374,257	+				+0.2
1,374,300	+				-1.4
1,374,313	-				+0.3
1,374,417	+	frdD	BNILDI_06870	0.31	-2.5
1,374,424	+	frdD	BNILDI_06870	0.33	-1.3
1,374,424	+	frdD	BNILDI_06870	0.33	-1.2
1,374,425	-	frdD	BNILDI_06870	0.34	-0.2
1,374,598	-	frdD	BNILDI_06870	0.82	+0.9
1,374,598	-	frdD	BNILDI_06870	0.82	-1.2
1,374,625	+	frdD	BNILDI_06870	0.89	-0.2
1,374,657	+				+0.6
1,374,658	-				+0.3
1,374,682	-				+0.6
1,374,701	+				+0.6
1,374,774	-		BNILDI_06875	0.25	+1.7
1,374,994	-		BNILDI_06875	0.81	+0.3
1,375,047	+				-0.3
1,375,047	+				+0.7
1,375,048	-				+1.1
1,375,048	-				-0.7
1,375,061	-				-0.2
1,375,126	-				+0.1
1,375,209	+	frdB	BNILDI_06880	0.18	-2.7
1,375,209	+	frdB	BNILDI_06880	0.18	+2.0
1,375,238	+	frdB	BNILDI_06880	0.21	+1.2