Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alr and tyrB are separated by 252 nucleotides tyrB and BNILDI_06360 are separated by 221 nucleotides
BNILDI_06350: alr - alanine racemase, at 1,267,465 to 1,268,544
alr
BNILDI_06355: tyrB - aromatic amino acid transaminase, at 1,268,797 to 1,269,990
tyrB
BNILDI_06360: BNILDI_06360 - hypothetical protein, at 1,270,212 to 1,270,715
_06360
Position (kb) 1268
1269
1270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1267.885 kb on + strand, within alr at 1267.929 kb on + strand, within alr at 1267.998 kb on + strand, within alr at 1267.998 kb on + strand, within alr at 1268.107 kb on + strand, within alr at 1268.376 kb on + strand, within alr at 1268.376 kb on + strand, within alr at 1268.393 kb on + strand, within alr at 1268.394 kb on - strand, within alr at 1268.394 kb on - strand, within alr at 1268.647 kb on + strand at 1268.673 kb on + strand at 1268.674 kb on - strand at 1268.674 kb on - strand at 1268.674 kb on - strand at 1268.702 kb on + strand at 1268.702 kb on + strand at 1268.703 kb on - strand at 1268.818 kb on + strand at 1268.856 kb on + strand at 1268.903 kb on - strand at 1268.992 kb on + strand, within tyrB at 1269.012 kb on + strand, within tyrB at 1269.148 kb on + strand, within tyrB at 1269.148 kb on + strand, within tyrB at 1269.149 kb on - strand, within tyrB at 1269.235 kb on - strand, within tyrB at 1269.319 kb on - strand, within tyrB at 1269.418 kb on - strand, within tyrB at 1269.418 kb on - strand, within tyrB at 1269.475 kb on + strand, within tyrB at 1269.476 kb on - strand, within tyrB at 1269.481 kb on - strand, within tyrB at 1269.646 kb on + strand, within tyrB at 1269.647 kb on - strand, within tyrB at 1269.783 kb on - strand, within tyrB at 1269.783 kb on - strand, within tyrB at 1269.785 kb on + strand, within tyrB at 1269.847 kb on + strand, within tyrB at 1269.902 kb on - strand at 1269.954 kb on - strand at 1270.198 kb on - strand at 1270.539 kb on + strand, within BNILDI_06360 at 1270.910 kb on - strand at 1270.921 kb on - strand at 1270.965 kb on + strand at 1270.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,267,885 + alr BNILDI_06350 0.39 -0.1 1,267,929 + alr BNILDI_06350 0.43 -0.1 1,267,998 + alr BNILDI_06350 0.49 +0.1 1,267,998 + alr BNILDI_06350 0.49 +0.3 1,268,107 + alr BNILDI_06350 0.59 +0.8 1,268,376 + alr BNILDI_06350 0.84 +1.3 1,268,376 + alr BNILDI_06350 0.84 +0.4 1,268,393 + alr BNILDI_06350 0.86 +0.2 1,268,394 - alr BNILDI_06350 0.86 +2.1 1,268,394 - alr BNILDI_06350 0.86 -0.0 1,268,647 + +0.5 1,268,673 + +0.4 1,268,674 - +0.3 1,268,674 - +0.5 1,268,674 - +0.0 1,268,702 + -0.0 1,268,702 + +0.9 1,268,703 - +0.1 1,268,818 + +0.0 1,268,856 + +0.7 1,268,903 - -0.0 1,268,992 + tyrB BNILDI_06355 0.16 -0.6 1,269,012 + tyrB BNILDI_06355 0.18 -0.6 1,269,148 + tyrB BNILDI_06355 0.29 +0.9 1,269,148 + tyrB BNILDI_06355 0.29 +1.2 1,269,149 - tyrB BNILDI_06355 0.29 -2.0 1,269,235 - tyrB BNILDI_06355 0.37 -0.6 1,269,319 - tyrB BNILDI_06355 0.44 -1.6 1,269,418 - tyrB BNILDI_06355 0.52 -0.0 1,269,418 - tyrB BNILDI_06355 0.52 -1.4 1,269,475 + tyrB BNILDI_06355 0.57 -0.3 1,269,476 - tyrB BNILDI_06355 0.57 -0.7 1,269,481 - tyrB BNILDI_06355 0.57 -1.1 1,269,646 + tyrB BNILDI_06355 0.71 -1.1 1,269,647 - tyrB BNILDI_06355 0.71 -0.3 1,269,783 - tyrB BNILDI_06355 0.83 +1.3 1,269,783 - tyrB BNILDI_06355 0.83 +1.5 1,269,785 + tyrB BNILDI_06355 0.83 -0.3 1,269,847 + tyrB BNILDI_06355 0.88 -1.4 1,269,902 - -1.0 1,269,954 - -0.4 1,270,198 - +0.5 1,270,539 + BNILDI_06360 0.65 -0.2 1,270,910 - -0.3 1,270,921 - +1.7 1,270,965 + +1.4 1,270,983 + +0.3
Or see this region's nucleotide sequence