Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ghrB and yiaF are separated by 49 nucleotides yiaF and yiaG are separated by 433 nucleotides
BNILDI_03580: ghrB - glyoxylate/hydroxypyruvate reductase GhrB, at 699,431 to 700,405
ghrB
BNILDI_03585: yiaF - Uncharacterized protein YiaF, at 700,455 to 701,165
yiaF
BNILDI_03590: yiaG - HTH-type transcriptional regulator, at 701,599 to 701,889
yiaG
Position (kb) 700
701
702 Strain fitness (log2 ratio) -2
-1
0
1
2 at 699.463 kb on - strand at 699.474 kb on + strand at 699.474 kb on + strand at 699.597 kb on + strand, within ghrB at 699.597 kb on + strand, within ghrB at 699.597 kb on + strand, within ghrB at 699.597 kb on + strand, within ghrB at 699.598 kb on - strand, within ghrB at 699.598 kb on - strand, within ghrB at 699.598 kb on - strand, within ghrB at 699.659 kb on + strand, within ghrB at 699.831 kb on + strand, within ghrB at 699.846 kb on - strand, within ghrB at 699.866 kb on - strand, within ghrB at 699.950 kb on + strand, within ghrB at 699.951 kb on - strand, within ghrB at 699.951 kb on - strand, within ghrB at 700.023 kb on + strand, within ghrB at 700.285 kb on + strand, within ghrB at 700.356 kb on + strand at 700.357 kb on - strand at 700.418 kb on + strand at 700.478 kb on + strand at 700.479 kb on - strand at 700.493 kb on + strand at 700.535 kb on + strand, within yiaF at 700.536 kb on - strand, within yiaF at 700.537 kb on + strand, within yiaF at 700.615 kb on + strand, within yiaF at 700.615 kb on + strand, within yiaF at 700.615 kb on + strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.616 kb on - strand, within yiaF at 700.750 kb on - strand, within yiaF at 701.010 kb on + strand, within yiaF at 701.036 kb on + strand, within yiaF at 701.106 kb on + strand at 701.107 kb on - strand at 701.112 kb on + strand at 701.113 kb on - strand at 701.262 kb on - strand at 701.262 kb on - strand at 701.265 kb on + strand at 701.266 kb on - strand at 701.366 kb on + strand at 701.366 kb on + strand at 701.384 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.424 kb on + strand at 701.425 kb on - strand at 701.448 kb on - strand at 701.457 kb on + strand at 701.541 kb on - strand at 701.607 kb on + strand at 701.720 kb on + strand, within yiaG at 701.832 kb on - strand, within yiaG at 701.914 kb on + strand at 701.946 kb on + strand at 701.947 kb on - strand at 701.949 kb on + strand at 702.022 kb on + strand at 702.042 kb on + strand at 702.042 kb on + strand at 702.042 kb on + strand at 702.043 kb on - strand at 702.152 kb on + strand at 702.153 kb on - strand at 702.161 kb on + strand at 702.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 699,463 - -0.6 699,474 + -0.5 699,474 + +0.2 699,597 + ghrB BNILDI_03580 0.17 +0.2 699,597 + ghrB BNILDI_03580 0.17 -0.0 699,597 + ghrB BNILDI_03580 0.17 +0.2 699,597 + ghrB BNILDI_03580 0.17 -1.4 699,598 - ghrB BNILDI_03580 0.17 +0.2 699,598 - ghrB BNILDI_03580 0.17 +0.4 699,598 - ghrB BNILDI_03580 0.17 +0.6 699,659 + ghrB BNILDI_03580 0.23 +0.3 699,831 + ghrB BNILDI_03580 0.41 -0.5 699,846 - ghrB BNILDI_03580 0.43 -0.7 699,866 - ghrB BNILDI_03580 0.45 -0.0 699,950 + ghrB BNILDI_03580 0.53 +1.4 699,951 - ghrB BNILDI_03580 0.53 +1.3 699,951 - ghrB BNILDI_03580 0.53 +0.0 700,023 + ghrB BNILDI_03580 0.61 -0.5 700,285 + ghrB BNILDI_03580 0.88 -0.1 700,356 + +0.1 700,357 - -0.4 700,418 + -0.4 700,478 + +0.3 700,479 - -0.5 700,493 + +0.9 700,535 + yiaF BNILDI_03585 0.11 -0.4 700,536 - yiaF BNILDI_03585 0.11 -0.4 700,537 + yiaF BNILDI_03585 0.12 +0.4 700,615 + yiaF BNILDI_03585 0.23 -0.2 700,615 + yiaF BNILDI_03585 0.23 -2.6 700,615 + yiaF BNILDI_03585 0.23 +0.2 700,616 - yiaF BNILDI_03585 0.23 -0.0 700,616 - yiaF BNILDI_03585 0.23 -1.9 700,616 - yiaF BNILDI_03585 0.23 +0.1 700,616 - yiaF BNILDI_03585 0.23 -1.5 700,750 - yiaF BNILDI_03585 0.41 -0.8 701,010 + yiaF BNILDI_03585 0.78 -2.5 701,036 + yiaF BNILDI_03585 0.82 +0.6 701,106 + +1.0 701,107 - -0.1 701,112 + +1.7 701,113 - +1.2 701,262 - +0.4 701,262 - +0.5 701,265 + +0.0 701,266 - -2.2 701,366 + +0.6 701,366 + +0.1 701,384 + -2.6 701,424 + +0.1 701,424 + -2.0 701,424 + -1.0 701,424 + +0.4 701,424 + -0.1 701,425 - +0.4 701,448 - -0.9 701,457 + +0.8 701,541 - +1.3 701,607 + -2.7 701,720 + yiaG BNILDI_03590 0.42 -1.3 701,832 - yiaG BNILDI_03590 0.80 +2.0 701,914 + +0.3 701,946 + +0.2 701,947 - -0.0 701,949 + +0.4 702,022 + -0.7 702,042 + -1.6 702,042 + -0.8 702,042 + -0.7 702,043 - +0.5 702,152 + -0.6 702,153 - -0.2 702,161 + -0.4 702,162 - -0.7
Or see this region's nucleotide sequence