Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_03225 and arsR are separated by 307 nucleotides arsR and arsB are separated by 53 nucleotides arsB and arsC are separated by 12 nucleotides arsC and BNILDI_03250 are separated by 133 nucleotides BNILDI_03250 and BNILDI_03255 are separated by 106 nucleotides
BNILDI_03225: BNILDI_03225 - hypothetical protein, at 627,411 to 627,584
_03225
BNILDI_03235: arsR - As(III)-sensing metalloregulatory transcriptional repressor ArsR, at 627,892 to 628,245
arsR
BNILDI_03240: arsB - arsenite/antimonite:H(+) antiporter ArsB, at 628,299 to 629,588
arsB
BNILDI_03245: arsC - glutaredoxin-dependent arsenate reductase, at 629,601 to 630,026
arsC
BNILDI_03250: BNILDI_03250 - transcriptional regulator, at 630,160 to 630,456
_03250
BNILDI_03255: BNILDI_03255 - putative permease, at 630,563 to 631,564
_03255
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 627.348 kb on + strand at 627.349 kb on - strand at 627.349 kb on - strand at 627.375 kb on - strand at 627.455 kb on - strand, within BNILDI_03225 at 627.455 kb on - strand, within BNILDI_03225 at 627.589 kb on - strand at 627.606 kb on + strand at 627.606 kb on + strand at 627.606 kb on + strand at 627.793 kb on + strand at 627.794 kb on - strand at 627.891 kb on + strand at 627.892 kb on - strand at 627.959 kb on + strand, within arsR at 628.068 kb on - strand, within arsR at 628.089 kb on + strand, within arsR at 628.336 kb on + strand at 628.363 kb on + strand at 628.491 kb on - strand, within arsB at 628.583 kb on + strand, within arsB at 628.583 kb on + strand, within arsB at 628.646 kb on + strand, within arsB at 628.703 kb on + strand, within arsB at 628.822 kb on - strand, within arsB at 628.879 kb on + strand, within arsB at 628.879 kb on + strand, within arsB at 628.880 kb on - strand, within arsB at 628.880 kb on - strand, within arsB at 628.880 kb on - strand, within arsB at 628.880 kb on - strand, within arsB at 628.888 kb on - strand, within arsB at 628.902 kb on - strand, within arsB at 628.914 kb on + strand, within arsB at 628.964 kb on + strand, within arsB at 628.965 kb on - strand, within arsB at 628.991 kb on - strand, within arsB at 628.991 kb on - strand, within arsB at 629.071 kb on + strand, within arsB at 629.074 kb on + strand, within arsB at 629.074 kb on + strand, within arsB at 629.074 kb on + strand, within arsB at 629.074 kb on + strand, within arsB at 629.075 kb on - strand, within arsB at 629.166 kb on + strand, within arsB at 629.166 kb on + strand, within arsB at 629.166 kb on + strand, within arsB at 629.166 kb on + strand, within arsB at 629.167 kb on - strand, within arsB at 629.167 kb on - strand, within arsB at 629.167 kb on - strand, within arsB at 629.297 kb on + strand, within arsB at 629.297 kb on + strand, within arsB at 629.297 kb on + strand, within arsB at 629.298 kb on - strand, within arsB at 629.298 kb on - strand, within arsB at 629.309 kb on + strand, within arsB at 629.385 kb on + strand, within arsB at 629.449 kb on + strand, within arsB at 629.465 kb on - strand at 629.480 kb on + strand at 629.486 kb on + strand at 629.502 kb on + strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.519 kb on + strand at 629.594 kb on + strand at 629.594 kb on + strand at 629.595 kb on - strand at 629.601 kb on - strand at 629.612 kb on + strand at 629.613 kb on - strand at 629.619 kb on + strand at 629.620 kb on - strand at 629.649 kb on - strand, within arsC at 629.651 kb on + strand, within arsC at 629.652 kb on - strand, within arsC at 629.652 kb on - strand, within arsC at 629.781 kb on - strand, within arsC at 630.048 kb on + strand at 630.099 kb on - strand at 630.130 kb on + strand at 630.130 kb on + strand at 630.131 kb on - strand at 630.143 kb on - strand at 630.175 kb on - strand at 630.179 kb on - strand at 630.298 kb on + strand, within BNILDI_03250 at 630.298 kb on + strand, within BNILDI_03250 at 630.300 kb on + strand, within BNILDI_03250 at 630.300 kb on + strand, within BNILDI_03250 at 630.300 kb on + strand, within BNILDI_03250 at 630.301 kb on - strand, within BNILDI_03250 at 630.301 kb on - strand, within BNILDI_03250 at 630.301 kb on - strand, within BNILDI_03250 at 630.394 kb on + strand, within BNILDI_03250 at 630.395 kb on - strand, within BNILDI_03250 at 630.418 kb on + strand, within BNILDI_03250 at 630.419 kb on - strand, within BNILDI_03250 at 630.456 kb on + strand at 630.456 kb on + strand at 630.457 kb on - strand at 630.558 kb on + strand at 630.558 kb on + strand at 630.562 kb on + strand at 630.562 kb on + strand at 630.562 kb on + strand at 630.563 kb on - strand at 630.563 kb on - strand at 630.563 kb on - strand at 630.563 kb on - strand at 630.568 kb on + strand at 630.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 627,348 + -0.8 627,349 - +0.2 627,349 - -0.2 627,375 - -1.0 627,455 - BNILDI_03225 0.25 +0.8 627,455 - BNILDI_03225 0.25 -0.0 627,589 - +0.6 627,606 + -0.0 627,606 + +0.5 627,606 + -0.6 627,793 + +0.3 627,794 - +0.6 627,891 + +0.9 627,892 - +0.4 627,959 + arsR BNILDI_03235 0.19 +0.7 628,068 - arsR BNILDI_03235 0.50 +0.2 628,089 + arsR BNILDI_03235 0.56 -1.4 628,336 + +0.0 628,363 + +0.5 628,491 - arsB BNILDI_03240 0.15 +0.0 628,583 + arsB BNILDI_03240 0.22 +0.2 628,583 + arsB BNILDI_03240 0.22 -0.8 628,646 + arsB BNILDI_03240 0.27 -0.5 628,703 + arsB BNILDI_03240 0.31 -2.1 628,822 - arsB BNILDI_03240 0.41 +0.5 628,879 + arsB BNILDI_03240 0.45 +0.2 628,879 + arsB BNILDI_03240 0.45 -0.0 628,880 - arsB BNILDI_03240 0.45 +0.7 628,880 - arsB BNILDI_03240 0.45 -0.1 628,880 - arsB BNILDI_03240 0.45 -0.5 628,880 - arsB BNILDI_03240 0.45 -1.9 628,888 - arsB BNILDI_03240 0.46 +0.4 628,902 - arsB BNILDI_03240 0.47 +0.0 628,914 + arsB BNILDI_03240 0.48 -0.2 628,964 + arsB BNILDI_03240 0.52 +0.8 628,965 - arsB BNILDI_03240 0.52 +0.7 628,991 - arsB BNILDI_03240 0.54 -0.5 628,991 - arsB BNILDI_03240 0.54 -0.1 629,071 + arsB BNILDI_03240 0.60 -1.6 629,074 + arsB BNILDI_03240 0.60 +1.0 629,074 + arsB BNILDI_03240 0.60 +0.1 629,074 + arsB BNILDI_03240 0.60 +0.3 629,074 + arsB BNILDI_03240 0.60 -0.0 629,075 - arsB BNILDI_03240 0.60 +0.6 629,166 + arsB BNILDI_03240 0.67 +0.6 629,166 + arsB BNILDI_03240 0.67 -0.0 629,166 + arsB BNILDI_03240 0.67 -0.2 629,166 + arsB BNILDI_03240 0.67 +0.2 629,167 - arsB BNILDI_03240 0.67 -1.4 629,167 - arsB BNILDI_03240 0.67 +0.0 629,167 - arsB BNILDI_03240 0.67 -1.1 629,297 + arsB BNILDI_03240 0.77 +0.5 629,297 + arsB BNILDI_03240 0.77 +1.4 629,297 + arsB BNILDI_03240 0.77 -0.1 629,298 - arsB BNILDI_03240 0.77 -0.2 629,298 - arsB BNILDI_03240 0.77 +0.7 629,309 + arsB BNILDI_03240 0.78 +0.0 629,385 + arsB BNILDI_03240 0.84 +0.0 629,449 + arsB BNILDI_03240 0.89 -0.1 629,465 - -1.1 629,480 + +0.6 629,486 + -0.9 629,502 + -1.2 629,503 - +1.7 629,503 - -0.0 629,503 - +0.4 629,519 + +0.0 629,594 + -2.1 629,594 + +0.2 629,595 - -0.4 629,601 - +0.2 629,612 + +0.1 629,613 - -1.2 629,619 + -0.5 629,620 - +4.9 629,649 - arsC BNILDI_03245 0.11 -0.4 629,651 + arsC BNILDI_03245 0.12 +0.7 629,652 - arsC BNILDI_03245 0.12 +1.2 629,652 - arsC BNILDI_03245 0.12 +0.1 629,781 - arsC BNILDI_03245 0.42 +0.1 630,048 + +0.5 630,099 - +0.3 630,130 + -1.1 630,130 + +0.2 630,131 - -0.7 630,143 - -0.4 630,175 - +0.3 630,179 - +0.5 630,298 + BNILDI_03250 0.46 -0.1 630,298 + BNILDI_03250 0.46 +0.1 630,300 + BNILDI_03250 0.47 +0.4 630,300 + BNILDI_03250 0.47 -0.4 630,300 + BNILDI_03250 0.47 -0.4 630,301 - BNILDI_03250 0.47 +0.4 630,301 - BNILDI_03250 0.47 +0.7 630,301 - BNILDI_03250 0.47 +0.2 630,394 + BNILDI_03250 0.79 -0.2 630,395 - BNILDI_03250 0.79 -0.1 630,418 + BNILDI_03250 0.87 -0.0 630,419 - BNILDI_03250 0.87 -0.5 630,456 + +0.8 630,456 + +0.4 630,457 - +0.4 630,558 + -0.1 630,558 + +0.6 630,562 + +1.9 630,562 + -0.3 630,562 + -0.3 630,563 - +0.3 630,563 - +0.5 630,563 - +1.8 630,563 - -0.3 630,568 + +0.5 630,569 - -0.3
Or see this region's nucleotide sequence