Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asd and yhgN are separated by 192 nucleotides yhgN and gntU are separated by 56 nucleotides gntU and gntK are separated by 3 nucleotides gntK and gntR are separated by 138 nucleotides
BNILDI_02850: asd - aspartate-semialdehyde dehydrogenase, at 553,675 to 554,778
asd
BNILDI_02855: yhgN - NAAT family transporter YhgN, at 554,971 to 555,564
yhgN
BNILDI_02860: gntU - gluconate transporter, at 555,621 to 556,961
gntU
BNILDI_02865: gntK - gluconokinase, at 556,965 to 557,492
gntK
BNILDI_02870: gntR - gluconate operon transcriptional repressor GntR, at 557,631 to 558,626
gntR
Position (kb) 555
556
557 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 554.810 kb on + strand at 554.811 kb on - strand at 554.812 kb on + strand at 554.813 kb on - strand at 554.928 kb on + strand at 554.954 kb on - strand at 555.036 kb on + strand, within yhgN at 555.037 kb on - strand, within yhgN at 555.060 kb on + strand, within yhgN at 555.061 kb on - strand, within yhgN at 555.061 kb on - strand, within yhgN at 555.215 kb on + strand, within yhgN at 555.225 kb on + strand, within yhgN at 555.225 kb on + strand, within yhgN at 555.255 kb on + strand, within yhgN at 555.255 kb on + strand, within yhgN at 555.288 kb on + strand, within yhgN at 555.289 kb on - strand, within yhgN at 555.431 kb on + strand, within yhgN at 555.431 kb on + strand, within yhgN at 555.623 kb on - strand at 555.794 kb on + strand, within gntU at 555.830 kb on - strand, within gntU at 555.939 kb on - strand, within gntU at 556.337 kb on + strand, within gntU at 556.338 kb on - strand, within gntU at 556.388 kb on + strand, within gntU at 556.530 kb on + strand, within gntU at 556.531 kb on - strand, within gntU at 556.725 kb on + strand, within gntU at 556.742 kb on + strand, within gntU at 556.742 kb on + strand, within gntU at 556.742 kb on + strand, within gntU at 556.743 kb on - strand, within gntU at 556.929 kb on + strand at 556.955 kb on + strand at 556.955 kb on + strand at 556.956 kb on - strand at 556.956 kb on - strand at 556.956 kb on - strand at 556.962 kb on + strand at 556.962 kb on + strand at 556.963 kb on - strand at 556.967 kb on - strand at 556.967 kb on - strand at 557.040 kb on + strand, within gntK at 557.040 kb on + strand, within gntK at 557.168 kb on - strand, within gntK at 557.252 kb on + strand, within gntK at 557.253 kb on - strand, within gntK at 557.253 kb on - strand, within gntK at 557.461 kb on + strand at 557.461 kb on + strand at 557.462 kb on - strand at 557.510 kb on - strand at 557.510 kb on - strand at 557.594 kb on + strand at 557.636 kb on + strand at 557.730 kb on - strand at 557.888 kb on + strand, within gntR at 557.888 kb on + strand, within gntR at 557.888 kb on + strand, within gntR at 557.889 kb on - strand, within gntR at 557.889 kb on - strand, within gntR at 557.889 kb on - strand, within gntR at 557.891 kb on + strand, within gntR at 557.891 kb on + strand, within gntR
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 554,810 + -3.8 554,811 - +0.5 554,812 + -3.1 554,813 - +0.9 554,928 + +0.3 554,954 - +1.9 555,036 + yhgN BNILDI_02855 0.11 +1.4 555,037 - yhgN BNILDI_02855 0.11 +1.6 555,060 + yhgN BNILDI_02855 0.15 +0.1 555,061 - yhgN BNILDI_02855 0.15 +0.3 555,061 - yhgN BNILDI_02855 0.15 +2.2 555,215 + yhgN BNILDI_02855 0.41 +0.4 555,225 + yhgN BNILDI_02855 0.43 +0.3 555,225 + yhgN BNILDI_02855 0.43 +0.5 555,255 + yhgN BNILDI_02855 0.48 +0.2 555,255 + yhgN BNILDI_02855 0.48 -0.1 555,288 + yhgN BNILDI_02855 0.53 -3.0 555,289 - yhgN BNILDI_02855 0.54 -0.2 555,431 + yhgN BNILDI_02855 0.77 -0.3 555,431 + yhgN BNILDI_02855 0.77 +1.0 555,623 - -0.1 555,794 + gntU BNILDI_02860 0.13 -0.0 555,830 - gntU BNILDI_02860 0.16 -0.3 555,939 - gntU BNILDI_02860 0.24 -0.6 556,337 + gntU BNILDI_02860 0.53 -0.2 556,338 - gntU BNILDI_02860 0.53 -0.3 556,388 + gntU BNILDI_02860 0.57 -1.7 556,530 + gntU BNILDI_02860 0.68 -1.5 556,531 - gntU BNILDI_02860 0.68 +0.4 556,725 + gntU BNILDI_02860 0.82 -0.4 556,742 + gntU BNILDI_02860 0.84 -0.0 556,742 + gntU BNILDI_02860 0.84 -0.1 556,742 + gntU BNILDI_02860 0.84 +0.5 556,743 - gntU BNILDI_02860 0.84 -0.3 556,929 + -1.4 556,955 + +0.3 556,955 + -0.8 556,956 - -0.1 556,956 - +1.7 556,956 - +0.3 556,962 + -0.3 556,962 + +1.7 556,963 - -0.4 556,967 - +0.3 556,967 - -0.4 557,040 + gntK BNILDI_02865 0.14 +1.9 557,040 + gntK BNILDI_02865 0.14 -1.1 557,168 - gntK BNILDI_02865 0.38 -0.2 557,252 + gntK BNILDI_02865 0.54 -0.4 557,253 - gntK BNILDI_02865 0.55 -1.4 557,253 - gntK BNILDI_02865 0.55 -0.1 557,461 + -0.2 557,461 + -1.5 557,462 - +2.1 557,510 - -1.8 557,510 - -1.1 557,594 + -0.2 557,636 + +0.4 557,730 - -1.2 557,888 + gntR BNILDI_02870 0.26 +0.0 557,888 + gntR BNILDI_02870 0.26 +0.7 557,888 + gntR BNILDI_02870 0.26 +0.1 557,889 - gntR BNILDI_02870 0.26 +0.5 557,889 - gntR BNILDI_02870 0.26 +0.6 557,889 - gntR BNILDI_02870 0.26 +0.1 557,891 + gntR BNILDI_02870 0.26 -0.4 557,891 + gntR BNILDI_02870 0.26 +0.1
Or see this region's nucleotide sequence