Strain Fitness in Escherichia coli ECRC62 around BNILDI_02815

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_02805 and BNILDI_02810 are separated by 2 nucleotidesBNILDI_02810 and BNILDI_02815 are separated by 14 nucleotidesBNILDI_02815 and glgP are separated by 127 nucleotides BNILDI_02805: BNILDI_02805 - hypothetical protein, at 540,906 to 541,673 _02805 BNILDI_02810: BNILDI_02810 - YjgN_1 protein, at 541,676 to 542,386 _02810 BNILDI_02815: BNILDI_02815 - phosphate ABC transporter substrate-binding protein, at 542,401 to 543,906 _02815 BNILDI_02820: glgP - glycogen phosphorylase, at 544,034 to 546,481 glgP Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1at 541.517 kb on - strand, within BNILDI_02805at 541.539 kb on - strand, within BNILDI_02805at 541.539 kb on - strand, within BNILDI_02805at 541.645 kb on - strandat 541.673 kb on + strandat 541.678 kb on - strandat 541.789 kb on + strand, within BNILDI_02810at 541.790 kb on - strand, within BNILDI_02810at 541.834 kb on - strand, within BNILDI_02810at 541.919 kb on - strand, within BNILDI_02810at 541.939 kb on + strand, within BNILDI_02810at 541.982 kb on + strand, within BNILDI_02810at 541.982 kb on + strand, within BNILDI_02810at 541.982 kb on + strand, within BNILDI_02810at 542.006 kb on + strand, within BNILDI_02810at 542.069 kb on + strand, within BNILDI_02810at 542.069 kb on + strand, within BNILDI_02810at 542.082 kb on + strand, within BNILDI_02810at 542.159 kb on + strand, within BNILDI_02810at 542.160 kb on - strand, within BNILDI_02810at 542.197 kb on + strand, within BNILDI_02810at 542.371 kb on + strandat 542.418 kb on - strandat 542.434 kb on + strandat 542.434 kb on + strandat 542.435 kb on - strandat 542.506 kb on - strandat 542.506 kb on - strandat 542.713 kb on - strand, within BNILDI_02815at 542.914 kb on - strand, within BNILDI_02815at 542.918 kb on - strand, within BNILDI_02815at 543.028 kb on - strand, within BNILDI_02815at 543.039 kb on + strand, within BNILDI_02815at 543.058 kb on - strand, within BNILDI_02815at 543.059 kb on + strand, within BNILDI_02815at 543.060 kb on - strand, within BNILDI_02815at 543.060 kb on - strand, within BNILDI_02815at 543.089 kb on + strand, within BNILDI_02815at 543.131 kb on + strand, within BNILDI_02815at 543.131 kb on + strand, within BNILDI_02815at 543.146 kb on + strand, within BNILDI_02815at 543.146 kb on + strand, within BNILDI_02815at 543.146 kb on + strand, within BNILDI_02815at 543.147 kb on - strand, within BNILDI_02815at 543.147 kb on - strand, within BNILDI_02815at 543.314 kb on - strand, within BNILDI_02815at 543.314 kb on - strand, within BNILDI_02815at 543.317 kb on + strand, within BNILDI_02815at 543.318 kb on - strand, within BNILDI_02815at 543.318 kb on - strand, within BNILDI_02815at 543.318 kb on - strand, within BNILDI_02815at 543.357 kb on + strand, within BNILDI_02815at 543.460 kb on + strand, within BNILDI_02815at 543.461 kb on - strand, within BNILDI_02815at 543.462 kb on + strand, within BNILDI_02815at 543.462 kb on + strand, within BNILDI_02815at 543.462 kb on + strand, within BNILDI_02815at 543.463 kb on - strand, within BNILDI_02815at 543.529 kb on - strand, within BNILDI_02815at 543.622 kb on + strand, within BNILDI_02815at 543.653 kb on - strand, within BNILDI_02815at 543.707 kb on - strand, within BNILDI_02815at 543.732 kb on + strand, within BNILDI_02815at 543.907 kb on + strandat 544.019 kb on + strandat 544.054 kb on + strandat 544.088 kb on - strandat 544.105 kb on - strandat 544.111 kb on + strandat 544.112 kb on - strandat 544.178 kb on - strandat 544.195 kb on - strandat 544.289 kb on + strand, within glgPat 544.290 kb on - strand, within glgPat 544.408 kb on + strand, within glgPat 544.414 kb on + strand, within glgPat 544.414 kb on + strand, within glgPat 544.504 kb on + strand, within glgPat 544.594 kb on - strand, within glgPat 544.594 kb on - strand, within glgPat 544.659 kb on - strand, within glgPat 544.695 kb on + strand, within glgPat 544.695 kb on + strand, within glgPat 544.696 kb on - strand, within glgPat 544.828 kb on + strand, within glgPat 544.891 kb on + strand, within glgPat 544.892 kb on - strand, within glgP

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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541,517 - BNILDI_02805 0.80 +0.5
541,539 - BNILDI_02805 0.82 -0.1
541,539 - BNILDI_02805 0.82 -0.1
541,645 - -1.1
541,673 + -2.3
541,678 - -0.1
541,789 + BNILDI_02810 0.16 +0.2
541,790 - BNILDI_02810 0.16 -0.4
541,834 - BNILDI_02810 0.22 -0.1
541,919 - BNILDI_02810 0.34 -2.6
541,939 + BNILDI_02810 0.37 -0.1
541,982 + BNILDI_02810 0.43 -0.4
541,982 + BNILDI_02810 0.43 -0.0
541,982 + BNILDI_02810 0.43 +0.5
542,006 + BNILDI_02810 0.46 -1.6
542,069 + BNILDI_02810 0.55 +0.1
542,069 + BNILDI_02810 0.55 -0.7
542,082 + BNILDI_02810 0.57 +0.4
542,159 + BNILDI_02810 0.68 +0.6
542,160 - BNILDI_02810 0.68 -0.4
542,197 + BNILDI_02810 0.73 -0.5
542,371 + +0.9
542,418 - +0.3
542,434 + -1.2
542,434 + +0.2
542,435 - +0.1
542,506 - +0.3
542,506 - +0.0
542,713 - BNILDI_02815 0.21 -0.2
542,914 - BNILDI_02815 0.34 +1.4
542,918 - BNILDI_02815 0.34 +0.9
543,028 - BNILDI_02815 0.42 -0.2
543,039 + BNILDI_02815 0.42 +0.1
543,058 - BNILDI_02815 0.44 +0.1
543,059 + BNILDI_02815 0.44 +0.6
543,060 - BNILDI_02815 0.44 -0.6
543,060 - BNILDI_02815 0.44 +0.0
543,089 + BNILDI_02815 0.46 +0.1
543,131 + BNILDI_02815 0.48 -1.4
543,131 + BNILDI_02815 0.48 +0.6
543,146 + BNILDI_02815 0.49 -0.6
543,146 + BNILDI_02815 0.49 -1.2
543,146 + BNILDI_02815 0.49 +0.1
543,147 - BNILDI_02815 0.50 +0.3
543,147 - BNILDI_02815 0.50 +0.3
543,314 - BNILDI_02815 0.61 -0.2
543,314 - BNILDI_02815 0.61 +0.5
543,317 + BNILDI_02815 0.61 +0.7
543,318 - BNILDI_02815 0.61 -0.2
543,318 - BNILDI_02815 0.61 +0.5
543,318 - BNILDI_02815 0.61 +0.0
543,357 + BNILDI_02815 0.63 -0.6
543,460 + BNILDI_02815 0.70 +0.2
543,461 - BNILDI_02815 0.70 +1.1
543,462 + BNILDI_02815 0.70 -1.7
543,462 + BNILDI_02815 0.70 +0.5
543,462 + BNILDI_02815 0.70 -0.2
543,463 - BNILDI_02815 0.71 -3.7
543,529 - BNILDI_02815 0.75 -1.2
543,622 + BNILDI_02815 0.81 -0.7
543,653 - BNILDI_02815 0.83 -0.1
543,707 - BNILDI_02815 0.87 -1.8
543,732 + BNILDI_02815 0.88 -0.2
543,907 + -0.0
544,019 + -0.2
544,054 + +0.2
544,088 - -1.4
544,105 - +1.4
544,111 + -0.5
544,112 - -0.3
544,178 - -0.3
544,195 - +0.3
544,289 + glgP BNILDI_02820 0.10 +0.0
544,290 - glgP BNILDI_02820 0.10 -0.1
544,408 + glgP BNILDI_02820 0.15 -0.2
544,414 + glgP BNILDI_02820 0.16 +0.2
544,414 + glgP BNILDI_02820 0.16 +0.1
544,504 + glgP BNILDI_02820 0.19 -1.2
544,594 - glgP BNILDI_02820 0.23 +0.4
544,594 - glgP BNILDI_02820 0.23 -0.4
544,659 - glgP BNILDI_02820 0.26 -0.4
544,695 + glgP BNILDI_02820 0.27 +0.1
544,695 + glgP BNILDI_02820 0.27 -0.4
544,696 - glgP BNILDI_02820 0.27 +0.1
544,828 + glgP BNILDI_02820 0.32 -0.4
544,891 + glgP BNILDI_02820 0.35 +1.0
544,892 - glgP BNILDI_02820 0.35 -0.6

Or see this region's nucleotide sequence