Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gph and dam overlap by 8 nucleotides dam and dam are separated by 17 nucleotides dam and damX are separated by 106 nucleotides
BNILDI_02595: gph - phosphoglycolate phosphatase, at 490,369 to 491,127
gph
BNILDI_02600: dam - adenine-specific DNA-methyltransferase, at 491,120 to 491,797
dam
BNILDI_02605: dam - adenine-specific DNA-methyltransferase, at 491,815 to 492,651
dam
BNILDI_02610: damX - cell division protein DamX, at 492,758 to 494,044
damX
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 490.823 kb on + strand, within gph at 490.823 kb on + strand, within gph at 490.823 kb on + strand, within gph at 490.824 kb on - strand, within gph at 490.824 kb on - strand, within gph at 490.824 kb on - strand, within gph at 490.851 kb on + strand, within gph at 490.851 kb on + strand, within gph at 490.851 kb on + strand, within gph at 490.851 kb on + strand, within gph at 490.852 kb on - strand, within gph at 490.855 kb on + strand, within gph at 490.855 kb on + strand, within gph at 490.856 kb on - strand, within gph at 490.989 kb on + strand, within gph at 490.989 kb on + strand, within gph at 491.028 kb on - strand, within gph at 491.038 kb on - strand, within gph at 491.041 kb on + strand, within gph at 491.079 kb on + strand at 491.079 kb on + strand at 491.080 kb on - strand at 491.122 kb on - strand at 491.133 kb on - strand at 491.133 kb on - strand at 491.425 kb on - strand, within dam at 491.598 kb on - strand, within dam at 491.900 kb on - strand, within dam at 492.073 kb on - strand, within dam at 492.116 kb on + strand, within dam at 492.159 kb on - strand, within dam at 492.206 kb on + strand, within dam at 492.227 kb on + strand, within dam at 492.314 kb on + strand, within dam at 492.378 kb on - strand, within dam at 492.431 kb on - strand, within dam at 492.431 kb on - strand, within dam at 492.431 kb on - strand, within dam at 492.435 kb on - strand, within dam at 492.435 kb on - strand, within dam at 492.464 kb on + strand, within dam at 492.503 kb on + strand, within dam at 492.589 kb on - strand at 492.662 kb on + strand at 492.662 kb on + strand at 492.663 kb on - strand at 492.666 kb on + strand at 492.667 kb on - strand at 492.750 kb on - strand at 492.760 kb on - strand at 492.760 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.868 kb on - strand at 492.888 kb on + strand, within damX at 492.888 kb on + strand, within damX at 492.928 kb on - strand, within damX at 492.973 kb on - strand, within damX at 493.002 kb on + strand, within damX at 493.100 kb on + strand, within damX at 493.100 kb on + strand, within damX at 493.112 kb on - strand, within damX
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 490,823 + gph BNILDI_02595 0.60 -0.1 490,823 + gph BNILDI_02595 0.60 -1.6 490,823 + gph BNILDI_02595 0.60 +0.4 490,824 - gph BNILDI_02595 0.60 -2.5 490,824 - gph BNILDI_02595 0.60 -0.1 490,824 - gph BNILDI_02595 0.60 -1.9 490,851 + gph BNILDI_02595 0.64 +0.6 490,851 + gph BNILDI_02595 0.64 -0.6 490,851 + gph BNILDI_02595 0.64 -0.4 490,851 + gph BNILDI_02595 0.64 +0.5 490,852 - gph BNILDI_02595 0.64 +0.2 490,855 + gph BNILDI_02595 0.64 -0.3 490,855 + gph BNILDI_02595 0.64 -0.4 490,856 - gph BNILDI_02595 0.64 +0.2 490,989 + gph BNILDI_02595 0.82 +0.7 490,989 + gph BNILDI_02595 0.82 -1.3 491,028 - gph BNILDI_02595 0.87 -0.1 491,038 - gph BNILDI_02595 0.88 +0.6 491,041 + gph BNILDI_02595 0.89 +0.9 491,079 + +0.6 491,079 + -1.1 491,080 - -0.7 491,122 - -1.7 491,133 - +0.5 491,133 - +0.1 491,425 - dam BNILDI_02600 0.45 -2.2 491,598 - dam BNILDI_02600 0.71 -1.9 491,900 - dam BNILDI_02605 0.10 +0.5 492,073 - dam BNILDI_02605 0.31 -1.0 492,116 + dam BNILDI_02605 0.36 -1.3 492,159 - dam BNILDI_02605 0.41 -2.0 492,206 + dam BNILDI_02605 0.47 -1.0 492,227 + dam BNILDI_02605 0.49 +0.8 492,314 + dam BNILDI_02605 0.60 -0.9 492,378 - dam BNILDI_02605 0.67 -1.4 492,431 - dam BNILDI_02605 0.74 -1.5 492,431 - dam BNILDI_02605 0.74 -1.1 492,431 - dam BNILDI_02605 0.74 -1.0 492,435 - dam BNILDI_02605 0.74 +2.5 492,435 - dam BNILDI_02605 0.74 -0.0 492,464 + dam BNILDI_02605 0.78 +1.8 492,503 + dam BNILDI_02605 0.82 -3.1 492,589 - -1.4 492,662 + -1.0 492,662 + +1.9 492,663 - -0.7 492,666 + +0.3 492,667 - -0.6 492,750 - -0.3 492,760 - -0.6 492,760 - +0.1 492,833 - +1.0 492,833 - +0.4 492,868 - +0.1 492,888 + damX BNILDI_02610 0.10 -2.8 492,888 + damX BNILDI_02610 0.10 +0.7 492,928 - damX BNILDI_02610 0.13 +0.8 492,973 - damX BNILDI_02610 0.17 +0.5 493,002 + damX BNILDI_02610 0.19 -0.4 493,100 + damX BNILDI_02610 0.27 +0.2 493,100 + damX BNILDI_02610 0.27 +0.4 493,112 - damX BNILDI_02610 0.28 +1.5
Or see this region's nucleotide sequence