Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdh and argR are separated by 434 nucleotides argR and yhcN are separated by 364 nucleotides yhcN and yhcO are separated by 55 nucleotides
BNILDI_01940: mdh - malate dehydrogenase, at 380,677 to 381,615
mdh
BNILDI_01945: argR - transcriptional regulator ArgR, at 382,050 to 382,520
argR
BNILDI_01950: yhcN - peroxide/acid stress response protein YhcN, at 382,885 to 383,148
yhcN
BNILDI_01955: yhcO - Uncharacterized protein YhcO, at 383,204 to 383,476
yhcO
Position (kb) 382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 381.270 kb on + strand, within mdh at 381.271 kb on - strand, within mdh at 381.394 kb on - strand, within mdh at 381.394 kb on - strand, within mdh at 381.519 kb on - strand, within mdh at 381.562 kb on + strand at 381.648 kb on + strand at 381.648 kb on + strand at 381.648 kb on + strand at 381.732 kb on + strand at 381.739 kb on + strand at 381.747 kb on + strand at 381.747 kb on + strand at 381.777 kb on + strand at 381.830 kb on + strand at 381.830 kb on + strand at 381.830 kb on + strand at 381.831 kb on - strand at 381.831 kb on - strand at 381.831 kb on - strand at 381.831 kb on - strand at 381.831 kb on - strand at 381.831 kb on - strand at 381.884 kb on - strand at 381.962 kb on - strand at 382.017 kb on + strand at 382.078 kb on + strand at 382.118 kb on + strand, within argR at 382.217 kb on - strand, within argR at 382.221 kb on - strand, within argR at 382.281 kb on - strand, within argR at 382.281 kb on - strand, within argR at 382.370 kb on - strand, within argR at 382.410 kb on - strand, within argR at 382.518 kb on + strand at 382.860 kb on - strand at 382.868 kb on - strand at 382.904 kb on + strand at 382.904 kb on + strand at 382.913 kb on + strand, within yhcN at 383.038 kb on - strand, within yhcN at 383.107 kb on - strand, within yhcN at 383.267 kb on + strand, within yhcO at 383.267 kb on + strand, within yhcO at 383.267 kb on + strand, within yhcO at 383.268 kb on - strand, within yhcO at 383.386 kb on + strand, within yhcO at 383.393 kb on - strand, within yhcO at 383.466 kb on + strand at 383.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 381,270 + mdh BNILDI_01940 0.63 -2.7 381,271 - mdh BNILDI_01940 0.63 -3.0 381,394 - mdh BNILDI_01940 0.76 -0.9 381,394 - mdh BNILDI_01940 0.76 -0.4 381,519 - mdh BNILDI_01940 0.90 +0.3 381,562 + -1.1 381,648 + -1.3 381,648 + +0.0 381,648 + -0.1 381,732 + -0.0 381,739 + -0.9 381,747 + +0.6 381,747 + +1.5 381,777 + -0.2 381,830 + -0.8 381,830 + +0.6 381,830 + -1.4 381,831 - -2.3 381,831 - +0.3 381,831 - +0.6 381,831 - +0.4 381,831 - -0.4 381,831 - -0.3 381,884 - +1.1 381,962 - -0.4 382,017 + -3.2 382,078 + +1.6 382,118 + argR BNILDI_01945 0.14 -0.4 382,217 - argR BNILDI_01945 0.35 +0.9 382,221 - argR BNILDI_01945 0.36 -0.9 382,281 - argR BNILDI_01945 0.49 -0.4 382,281 - argR BNILDI_01945 0.49 -1.4 382,370 - argR BNILDI_01945 0.68 +1.0 382,410 - argR BNILDI_01945 0.76 -0.8 382,518 + +0.3 382,860 - -0.7 382,868 - -0.2 382,904 + +0.4 382,904 + -0.9 382,913 + yhcN BNILDI_01950 0.11 +0.4 383,038 - yhcN BNILDI_01950 0.58 -0.2 383,107 - yhcN BNILDI_01950 0.84 -0.6 383,267 + yhcO BNILDI_01955 0.23 -1.1 383,267 + yhcO BNILDI_01955 0.23 +0.1 383,267 + yhcO BNILDI_01955 0.23 -1.1 383,268 - yhcO BNILDI_01955 0.23 -0.5 383,386 + yhcO BNILDI_01955 0.67 +1.3 383,393 - yhcO BNILDI_01955 0.69 -0.5 383,466 + -0.6 383,470 + +0.5
Or see this region's nucleotide sequence