Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ptsN and rapZ are separated by 45 nucleotides rapZ and npr overlap by 4 nucleotides npr and yrbL are separated by 213 nucleotides yrbL and mtgA overlap by 4 nucleotides
BNILDI_01805: ptsN - PTS IIA-like nitrogen regulatory protein PtsN, at 350,952 to 351,443
ptsN
BNILDI_01810: rapZ - RNase adapter RapZ, at 351,489 to 352,343
rapZ
BNILDI_01815: npr - PTS phosphocarrier protein NPr, at 352,340 to 352,612
npr
BNILDI_01820: yrbL - PhoP regulatory network protein YrbL, at 352,826 to 353,458
yrbL
BNILDI_01825: mtgA - monofunctional biosynthetic peptidoglycan transglycosylase, at 353,455 to 354,183
mtgA
Position (kb) 352
353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 351.400 kb on - strand at 351.425 kb on + strand at 351.425 kb on + strand at 351.441 kb on + strand at 351.442 kb on - strand at 351.442 kb on - strand at 351.465 kb on - strand at 351.486 kb on + strand at 351.590 kb on - strand, within rapZ at 351.665 kb on + strand, within rapZ at 351.763 kb on + strand, within rapZ at 351.763 kb on + strand, within rapZ at 351.764 kb on - strand, within rapZ at 352.023 kb on + strand, within rapZ at 352.023 kb on + strand, within rapZ at 352.024 kb on - strand, within rapZ at 352.133 kb on - strand, within rapZ at 352.142 kb on + strand, within rapZ at 352.142 kb on + strand, within rapZ at 352.142 kb on + strand, within rapZ at 352.143 kb on - strand, within rapZ at 352.171 kb on + strand, within rapZ at 352.171 kb on + strand, within rapZ at 352.177 kb on + strand, within rapZ at 352.181 kb on + strand, within rapZ at 352.181 kb on + strand, within rapZ at 352.182 kb on - strand, within rapZ at 352.182 kb on - strand, within rapZ at 352.182 kb on - strand, within rapZ at 352.202 kb on + strand, within rapZ at 352.230 kb on - strand, within rapZ at 352.254 kb on + strand, within rapZ at 352.254 kb on + strand, within rapZ at 352.255 kb on - strand, within rapZ at 352.255 kb on - strand, within rapZ at 352.278 kb on + strand at 352.279 kb on - strand at 352.319 kb on + strand at 352.417 kb on - strand, within npr at 352.417 kb on - strand, within npr at 352.446 kb on + strand, within npr at 352.447 kb on - strand, within npr at 352.447 kb on - strand, within npr at 352.450 kb on + strand, within npr at 352.487 kb on - strand, within npr at 352.588 kb on + strand at 352.631 kb on - strand at 352.631 kb on - strand at 352.631 kb on - strand at 352.749 kb on + strand at 352.750 kb on - strand at 352.789 kb on + strand at 352.923 kb on - strand, within yrbL at 352.923 kb on - strand, within yrbL at 352.923 kb on - strand, within yrbL at 353.102 kb on - strand, within yrbL at 353.184 kb on - strand, within yrbL at 353.368 kb on + strand, within yrbL at 353.369 kb on - strand, within yrbL at 353.501 kb on + strand at 353.501 kb on + strand at 353.501 kb on + strand at 353.502 kb on - strand at 353.581 kb on + strand, within mtgA at 353.584 kb on + strand, within mtgA at 353.584 kb on + strand, within mtgA at 353.584 kb on + strand, within mtgA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 351,400 - -2.3 351,425 + -0.1 351,425 + +0.3 351,441 + +0.8 351,442 - -0.4 351,442 - -1.4 351,465 - +1.7 351,486 + +0.3 351,590 - rapZ BNILDI_01810 0.12 +1.9 351,665 + rapZ BNILDI_01810 0.21 -0.7 351,763 + rapZ BNILDI_01810 0.32 -0.1 351,763 + rapZ BNILDI_01810 0.32 -1.5 351,764 - rapZ BNILDI_01810 0.32 -3.4 352,023 + rapZ BNILDI_01810 0.62 +0.6 352,023 + rapZ BNILDI_01810 0.62 +0.3 352,024 - rapZ BNILDI_01810 0.63 -0.6 352,133 - rapZ BNILDI_01810 0.75 -2.9 352,142 + rapZ BNILDI_01810 0.76 +1.5 352,142 + rapZ BNILDI_01810 0.76 +2.5 352,142 + rapZ BNILDI_01810 0.76 -0.1 352,143 - rapZ BNILDI_01810 0.76 +0.2 352,171 + rapZ BNILDI_01810 0.80 +0.9 352,171 + rapZ BNILDI_01810 0.80 -1.0 352,177 + rapZ BNILDI_01810 0.80 +0.6 352,181 + rapZ BNILDI_01810 0.81 -0.1 352,181 + rapZ BNILDI_01810 0.81 +1.0 352,182 - rapZ BNILDI_01810 0.81 +1.9 352,182 - rapZ BNILDI_01810 0.81 -0.1 352,182 - rapZ BNILDI_01810 0.81 -0.5 352,202 + rapZ BNILDI_01810 0.83 +1.0 352,230 - rapZ BNILDI_01810 0.87 -0.2 352,254 + rapZ BNILDI_01810 0.89 +0.9 352,254 + rapZ BNILDI_01810 0.89 +0.2 352,255 - rapZ BNILDI_01810 0.90 +0.5 352,255 - rapZ BNILDI_01810 0.90 +0.6 352,278 + -0.4 352,279 - +2.3 352,319 + -2.1 352,417 - npr BNILDI_01815 0.28 -0.1 352,417 - npr BNILDI_01815 0.28 +0.0 352,446 + npr BNILDI_01815 0.39 -0.1 352,447 - npr BNILDI_01815 0.39 -1.2 352,447 - npr BNILDI_01815 0.39 -0.7 352,450 + npr BNILDI_01815 0.40 -0.3 352,487 - npr BNILDI_01815 0.54 -0.2 352,588 + +0.5 352,631 - +0.1 352,631 - +0.2 352,631 - -0.3 352,749 + -0.3 352,750 - +0.0 352,789 + +0.6 352,923 - yrbL BNILDI_01820 0.15 -0.0 352,923 - yrbL BNILDI_01820 0.15 -0.4 352,923 - yrbL BNILDI_01820 0.15 +0.4 353,102 - yrbL BNILDI_01820 0.44 +1.1 353,184 - yrbL BNILDI_01820 0.57 -0.8 353,368 + yrbL BNILDI_01820 0.86 +0.1 353,369 - yrbL BNILDI_01820 0.86 +0.2 353,501 + -0.8 353,501 + -0.5 353,501 + +1.3 353,502 - -0.1 353,581 + mtgA BNILDI_01825 0.17 -0.3 353,584 + mtgA BNILDI_01825 0.18 -0.7 353,584 + mtgA BNILDI_01825 0.18 +0.3 353,584 + mtgA BNILDI_01825 0.18 -0.8
Or see this region's nucleotide sequence