Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argG and yhbX are separated by 7 nucleotides yhbX and Leu_trna are separated by 458 nucleotides Leu_trna and secG are separated by 14 nucleotides
BNILDI_01645: argG - argininosuccinate synthase, at 323,158 to 324,501
argG
BNILDI_01650: yhbX - Putative transferase YhbX, at 324,509 to 326,134
yhbX
BNILDI_01655: Leu_trna - tRNA-Leu(gag), at 326,593 to 326,679
_trna
BNILDI_01660: secG - preprotein translocase subunit SecG, at 326,694 to 327,026
secG
Position (kb) 324
325
326
327 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 323.552 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.552 kb on - strand, within argG at 323.553 kb on + strand, within argG at 323.553 kb on + strand, within argG at 323.553 kb on + strand, within argG at 323.579 kb on - strand, within argG at 323.579 kb on - strand, within argG at 323.643 kb on + strand, within argG at 323.644 kb on - strand, within argG at 323.683 kb on - strand, within argG at 323.874 kb on - strand, within argG at 324.027 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.056 kb on + strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.057 kb on - strand, within argG at 324.279 kb on + strand, within argG at 324.279 kb on + strand, within argG at 324.302 kb on - strand, within argG at 324.361 kb on - strand, within argG at 324.381 kb on + strand at 324.622 kb on + strand at 324.624 kb on + strand at 324.624 kb on + strand at 324.625 kb on - strand at 324.625 kb on - strand at 324.691 kb on + strand, within yhbX at 324.696 kb on + strand, within yhbX at 324.696 kb on + strand, within yhbX at 324.697 kb on - strand, within yhbX at 324.700 kb on + strand, within yhbX at 324.700 kb on + strand, within yhbX at 324.705 kb on + strand, within yhbX at 324.706 kb on - strand, within yhbX at 324.775 kb on + strand, within yhbX at 324.775 kb on + strand, within yhbX at 324.792 kb on + strand, within yhbX at 324.793 kb on - strand, within yhbX at 324.793 kb on - strand, within yhbX at 324.829 kb on - strand, within yhbX at 324.876 kb on + strand, within yhbX at 324.877 kb on - strand, within yhbX at 324.931 kb on + strand, within yhbX at 324.931 kb on + strand, within yhbX at 324.957 kb on + strand, within yhbX at 325.016 kb on - strand, within yhbX at 325.041 kb on - strand, within yhbX at 325.041 kb on - strand, within yhbX at 325.072 kb on + strand, within yhbX at 325.073 kb on - strand, within yhbX at 325.094 kb on + strand, within yhbX at 325.131 kb on + strand, within yhbX at 325.166 kb on - strand, within yhbX at 325.175 kb on - strand, within yhbX at 325.235 kb on - strand, within yhbX at 325.244 kb on - strand, within yhbX at 325.260 kb on + strand, within yhbX at 325.264 kb on + strand, within yhbX at 325.326 kb on + strand, within yhbX at 325.351 kb on + strand, within yhbX at 325.351 kb on + strand, within yhbX at 325.351 kb on + strand, within yhbX at 325.406 kb on - strand, within yhbX at 325.407 kb on + strand, within yhbX at 325.413 kb on + strand, within yhbX at 325.436 kb on + strand, within yhbX at 325.462 kb on - strand, within yhbX at 325.560 kb on + strand, within yhbX at 325.561 kb on - strand, within yhbX at 325.787 kb on + strand, within yhbX at 325.788 kb on - strand, within yhbX at 325.801 kb on - strand, within yhbX at 325.849 kb on + strand, within yhbX at 325.886 kb on - strand, within yhbX at 325.897 kb on - strand, within yhbX at 325.904 kb on - strand, within yhbX at 325.906 kb on + strand, within yhbX at 325.906 kb on + strand, within yhbX at 325.907 kb on - strand, within yhbX at 325.907 kb on - strand, within yhbX at 325.975 kb on + strand at 325.976 kb on - strand at 325.976 kb on - strand at 325.976 kb on - strand at 326.027 kb on - strand at 326.060 kb on - strand at 326.280 kb on - strand at 326.426 kb on + strand at 326.427 kb on - strand at 326.451 kb on + strand at 326.456 kb on - strand at 326.491 kb on + strand at 326.515 kb on + strand at 326.686 kb on - strand at 326.689 kb on - strand at 326.689 kb on - strand at 327.010 kb on - strand at 327.027 kb on - strand at 327.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 323,552 - argG BNILDI_01645 0.29 -3.8 323,552 - argG BNILDI_01645 0.29 -4.6 323,552 - argG BNILDI_01645 0.29 -0.1 323,552 - argG BNILDI_01645 0.29 -4.4 323,553 + argG BNILDI_01645 0.29 -5.4 323,553 + argG BNILDI_01645 0.29 -2.4 323,553 + argG BNILDI_01645 0.29 -2.0 323,579 - argG BNILDI_01645 0.31 -3.9 323,579 - argG BNILDI_01645 0.31 -3.2 323,643 + argG BNILDI_01645 0.36 -1.9 323,644 - argG BNILDI_01645 0.36 -2.6 323,683 - argG BNILDI_01645 0.39 -4.1 323,874 - argG BNILDI_01645 0.53 -3.2 324,027 + argG BNILDI_01645 0.65 -6.0 324,056 + argG BNILDI_01645 0.67 -2.4 324,056 + argG BNILDI_01645 0.67 -5.2 324,056 + argG BNILDI_01645 0.67 -5.5 324,056 + argG BNILDI_01645 0.67 -3.9 324,056 + argG BNILDI_01645 0.67 -5.3 324,057 - argG BNILDI_01645 0.67 -4.6 324,057 - argG BNILDI_01645 0.67 -1.4 324,057 - argG BNILDI_01645 0.67 -3.4 324,057 - argG BNILDI_01645 0.67 -4.4 324,057 - argG BNILDI_01645 0.67 -4.4 324,279 + argG BNILDI_01645 0.83 -2.2 324,279 + argG BNILDI_01645 0.83 -3.9 324,302 - argG BNILDI_01645 0.85 -3.7 324,361 - argG BNILDI_01645 0.90 -3.0 324,381 + -4.1 324,622 + -0.3 324,624 + +1.3 324,624 + +0.1 324,625 - -0.0 324,625 - +1.1 324,691 + yhbX BNILDI_01650 0.11 -0.8 324,696 + yhbX BNILDI_01650 0.12 -0.3 324,696 + yhbX BNILDI_01650 0.12 +0.5 324,697 - yhbX BNILDI_01650 0.12 +0.0 324,700 + yhbX BNILDI_01650 0.12 +0.2 324,700 + yhbX BNILDI_01650 0.12 +2.3 324,705 + yhbX BNILDI_01650 0.12 -1.9 324,706 - yhbX BNILDI_01650 0.12 +0.8 324,775 + yhbX BNILDI_01650 0.16 +0.1 324,775 + yhbX BNILDI_01650 0.16 +0.7 324,792 + yhbX BNILDI_01650 0.17 -0.4 324,793 - yhbX BNILDI_01650 0.17 -0.3 324,793 - yhbX BNILDI_01650 0.17 -0.2 324,829 - yhbX BNILDI_01650 0.20 -0.1 324,876 + yhbX BNILDI_01650 0.23 +0.9 324,877 - yhbX BNILDI_01650 0.23 -1.8 324,931 + yhbX BNILDI_01650 0.26 -0.1 324,931 + yhbX BNILDI_01650 0.26 -2.4 324,957 + yhbX BNILDI_01650 0.28 +0.4 325,016 - yhbX BNILDI_01650 0.31 +2.0 325,041 - yhbX BNILDI_01650 0.33 +0.4 325,041 - yhbX BNILDI_01650 0.33 -0.9 325,072 + yhbX BNILDI_01650 0.35 -0.3 325,073 - yhbX BNILDI_01650 0.35 +1.3 325,094 + yhbX BNILDI_01650 0.36 -0.9 325,131 + yhbX BNILDI_01650 0.38 +0.1 325,166 - yhbX BNILDI_01650 0.40 -0.7 325,175 - yhbX BNILDI_01650 0.41 +0.2 325,235 - yhbX BNILDI_01650 0.45 -0.6 325,244 - yhbX BNILDI_01650 0.45 +0.0 325,260 + yhbX BNILDI_01650 0.46 -1.1 325,264 + yhbX BNILDI_01650 0.46 +1.6 325,326 + yhbX BNILDI_01650 0.50 +0.1 325,351 + yhbX BNILDI_01650 0.52 +0.6 325,351 + yhbX BNILDI_01650 0.52 -0.4 325,351 + yhbX BNILDI_01650 0.52 -0.1 325,406 - yhbX BNILDI_01650 0.55 +0.1 325,407 + yhbX BNILDI_01650 0.55 -0.0 325,413 + yhbX BNILDI_01650 0.56 +0.9 325,436 + yhbX BNILDI_01650 0.57 -0.4 325,462 - yhbX BNILDI_01650 0.59 -0.7 325,560 + yhbX BNILDI_01650 0.65 -0.3 325,561 - yhbX BNILDI_01650 0.65 -0.4 325,787 + yhbX BNILDI_01650 0.79 +1.8 325,788 - yhbX BNILDI_01650 0.79 +1.2 325,801 - yhbX BNILDI_01650 0.79 +0.3 325,849 + yhbX BNILDI_01650 0.82 +0.9 325,886 - yhbX BNILDI_01650 0.85 +0.2 325,897 - yhbX BNILDI_01650 0.85 -0.2 325,904 - yhbX BNILDI_01650 0.86 +0.8 325,906 + yhbX BNILDI_01650 0.86 +0.1 325,906 + yhbX BNILDI_01650 0.86 -0.2 325,907 - yhbX BNILDI_01650 0.86 +0.4 325,907 - yhbX BNILDI_01650 0.86 -0.2 325,975 + +0.3 325,976 - -0.6 325,976 - +0.0 325,976 - +0.5 326,027 - -0.4 326,060 - +0.3 326,280 - +0.1 326,426 + -0.3 326,427 - +0.5 326,451 + -0.0 326,456 - +1.9 326,491 + +0.3 326,515 + +1.8 326,686 - +1.1 326,689 - -0.1 326,689 - -0.9 327,010 - +0.1 327,027 - +0.6 327,091 - +0.1
Or see this region's nucleotide sequence