Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt insB and BNILDI_01285 are separated by 128 nucleotides BNILDI_01285 and BNILDI_01290 are separated by 319 nucleotides BNILDI_01290 and yhaJ are separated by 50 nucleotides
BNILDI_01280: insB - Transposase and inactivated derivatives, IS1 family, at 251,732 to 252,025
insB
BNILDI_01285: BNILDI_01285 - HTH-Tnp-IS1 domain-containing protein, at 252,154 to 252,213
_01285
BNILDI_01290: BNILDI_01290 - DUF805 domain-containing protein, at 252,533 to 252,817
_01290
BNILDI_01295: yhaJ - DNA-binding transcriptional regulator YhaJ, at 252,868 to 253,764
yhaJ
Position (kb) 252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 251.671 kb on - strand at 251.694 kb on + strand at 251.695 kb on - strand at 251.698 kb on + strand at 251.704 kb on + strand at 252.459 kb on + strand at 252.491 kb on + strand at 252.539 kb on - strand at 252.569 kb on - strand, within BNILDI_01290 at 252.623 kb on + strand, within BNILDI_01290 at 252.679 kb on + strand, within BNILDI_01290 at 252.710 kb on + strand, within BNILDI_01290 at 252.735 kb on + strand, within BNILDI_01290 at 252.748 kb on - strand, within BNILDI_01290 at 252.760 kb on - strand, within BNILDI_01290 at 252.816 kb on - strand at 252.857 kb on - strand at 252.928 kb on - strand at 252.949 kb on - strand at 252.951 kb on + strand at 252.952 kb on - strand at 253.260 kb on + strand, within yhaJ at 253.261 kb on - strand, within yhaJ at 253.262 kb on + strand, within yhaJ at 253.263 kb on - strand, within yhaJ at 253.263 kb on - strand, within yhaJ at 253.263 kb on - strand, within yhaJ at 253.421 kb on - strand, within yhaJ at 253.646 kb on + strand, within yhaJ at 253.650 kb on + strand, within yhaJ at 253.650 kb on + strand, within yhaJ at 253.651 kb on - strand, within yhaJ at 253.651 kb on - strand, within yhaJ at 253.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 251,671 - -0.8 251,694 + -0.8 251,695 - -0.1 251,698 + -1.0 251,704 + +0.0 252,459 + +0.5 252,491 + +0.2 252,539 - +1.7 252,569 - BNILDI_01290 0.13 +0.4 252,623 + BNILDI_01290 0.32 -0.5 252,679 + BNILDI_01290 0.51 -0.8 252,710 + BNILDI_01290 0.62 +0.2 252,735 + BNILDI_01290 0.71 +0.6 252,748 - BNILDI_01290 0.75 +1.4 252,760 - BNILDI_01290 0.80 -1.9 252,816 - +0.1 252,857 - +1.4 252,928 - +1.0 252,949 - +0.3 252,951 + +0.1 252,952 - +0.4 253,260 + yhaJ BNILDI_01295 0.44 +0.9 253,261 - yhaJ BNILDI_01295 0.44 -0.7 253,262 + yhaJ BNILDI_01295 0.44 -0.8 253,263 - yhaJ BNILDI_01295 0.44 -0.5 253,263 - yhaJ BNILDI_01295 0.44 -0.8 253,263 - yhaJ BNILDI_01295 0.44 -0.8 253,421 - yhaJ BNILDI_01295 0.62 +0.7 253,646 + yhaJ BNILDI_01295 0.87 -0.1 253,650 + yhaJ BNILDI_01295 0.87 -0.1 253,650 + yhaJ BNILDI_01295 0.87 -0.6 253,651 - yhaJ BNILDI_01295 0.87 -0.2 253,651 - yhaJ BNILDI_01295 0.87 +0.8 253,793 - +0.9
Or see this region's nucleotide sequence