Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cfaD,cfaE and cfaC overlap by 4 nucleotides cfaC and cfaB are separated by 91 nucleotides cfaB and cfaA are separated by 29 nucleotides
BNILDI_01205: cfaD,cfaE - minor pilin and initiator, at 240,024 to 241,112
cfaD,cfaE
BNILDI_01210: cfaC - colonisation factor antigen c, usher, at 241,109 to 243,793
cfaC
BNILDI_01215: cfaB - colonization factor antigen 1, at 243,885 to 244,385
cfaB
BNILDI_01220: cfaA - colonisation factor antigen a, chaperone, at 244,415 to 245,131
cfaA
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 240.111 kb on - strand at 240.323 kb on - strand, within cfaD,cfaE at 240.323 kb on - strand, within cfaD,cfaE at 240.323 kb on - strand, within cfaD,cfaE at 240.334 kb on + strand, within cfaD,cfaE at 240.335 kb on - strand, within cfaD,cfaE at 240.388 kb on + strand, within cfaD,cfaE at 240.454 kb on + strand, within cfaD,cfaE at 240.492 kb on + strand, within cfaD,cfaE at 240.543 kb on - strand, within cfaD,cfaE at 240.560 kb on + strand, within cfaD,cfaE at 240.572 kb on + strand, within cfaD,cfaE at 240.573 kb on - strand, within cfaD,cfaE at 240.698 kb on - strand, within cfaD,cfaE at 240.699 kb on + strand, within cfaD,cfaE at 240.700 kb on - strand, within cfaD,cfaE at 240.700 kb on - strand, within cfaD,cfaE at 240.700 kb on - strand, within cfaD,cfaE at 240.701 kb on + strand, within cfaD,cfaE at 240.701 kb on + strand, within cfaD,cfaE at 240.702 kb on - strand, within cfaD,cfaE at 240.702 kb on - strand, within cfaD,cfaE at 240.702 kb on - strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.703 kb on + strand, within cfaD,cfaE at 240.704 kb on - strand, within cfaD,cfaE at 240.704 kb on - strand, within cfaD,cfaE at 240.704 kb on - strand, within cfaD,cfaE at 240.726 kb on - strand, within cfaD,cfaE at 240.738 kb on - strand, within cfaD,cfaE at 240.740 kb on + strand, within cfaD,cfaE at 240.804 kb on - strand, within cfaD,cfaE at 240.804 kb on - strand, within cfaD,cfaE at 240.807 kb on + strand, within cfaD,cfaE at 240.808 kb on - strand, within cfaD,cfaE at 240.874 kb on + strand, within cfaD,cfaE at 240.893 kb on + strand, within cfaD,cfaE at 240.893 kb on + strand, within cfaD,cfaE at 240.894 kb on - strand, within cfaD,cfaE at 240.903 kb on - strand, within cfaD,cfaE at 240.950 kb on + strand, within cfaD,cfaE at 240.950 kb on + strand, within cfaD,cfaE at 240.950 kb on + strand, within cfaD,cfaE at 240.951 kb on - strand, within cfaD,cfaE at 240.951 kb on - strand, within cfaD,cfaE at 240.951 kb on - strand, within cfaD,cfaE at 240.951 kb on - strand, within cfaD,cfaE at 240.952 kb on + strand, within cfaD,cfaE at 240.959 kb on + strand, within cfaD,cfaE at 240.991 kb on + strand, within cfaD,cfaE at 240.991 kb on + strand, within cfaD,cfaE at 241.026 kb on - strand at 241.152 kb on - strand at 241.206 kb on + strand at 241.207 kb on - strand at 241.219 kb on + strand at 241.220 kb on - strand at 241.220 kb on - strand at 241.225 kb on + strand at 241.226 kb on - strand at 241.308 kb on + strand at 241.343 kb on - strand at 241.424 kb on + strand, within cfaC at 241.437 kb on + strand, within cfaC at 241.437 kb on + strand, within cfaC at 241.438 kb on - strand, within cfaC at 241.438 kb on - strand, within cfaC at 241.443 kb on + strand, within cfaC at 241.444 kb on - strand, within cfaC at 241.447 kb on + strand, within cfaC at 241.497 kb on - strand, within cfaC at 241.741 kb on + strand, within cfaC at 241.792 kb on + strand, within cfaC at 241.792 kb on + strand, within cfaC at 241.794 kb on + strand, within cfaC at 241.794 kb on + strand, within cfaC at 241.794 kb on + strand, within cfaC at 241.794 kb on + strand, within cfaC at 241.794 kb on + strand, within cfaC at 241.795 kb on - strand, within cfaC at 241.795 kb on - strand, within cfaC at 241.795 kb on - strand, within cfaC at 241.839 kb on + strand, within cfaC at 241.839 kb on + strand, within cfaC at 241.840 kb on - strand, within cfaC at 241.861 kb on - strand, within cfaC at 241.907 kb on + strand, within cfaC at 241.907 kb on + strand, within cfaC at 241.908 kb on - strand, within cfaC at 241.969 kb on + strand, within cfaC at 241.972 kb on - strand, within cfaC at 241.972 kb on - strand, within cfaC at 242.106 kb on + strand, within cfaC at 242.106 kb on + strand, within cfaC at 242.107 kb on - strand, within cfaC at 242.216 kb on + strand, within cfaC at 242.217 kb on - strand, within cfaC at 242.230 kb on + strand, within cfaC at 242.230 kb on + strand, within cfaC at 242.260 kb on + strand, within cfaC at 242.296 kb on + strand, within cfaC at 242.296 kb on + strand, within cfaC at 242.401 kb on + strand, within cfaC at 242.403 kb on + strand, within cfaC at 242.403 kb on + strand, within cfaC at 242.403 kb on + strand, within cfaC at 242.404 kb on - strand, within cfaC at 242.404 kb on - strand, within cfaC at 242.404 kb on - strand, within cfaC at 242.404 kb on - strand, within cfaC at 242.426 kb on - strand, within cfaC at 242.426 kb on - strand, within cfaC at 242.426 kb on - strand, within cfaC at 242.454 kb on + strand, within cfaC at 242.637 kb on + strand, within cfaC at 242.647 kb on - strand, within cfaC at 242.657 kb on + strand, within cfaC at 242.658 kb on - strand, within cfaC at 242.658 kb on - strand, within cfaC at 242.683 kb on - strand, within cfaC at 242.716 kb on + strand, within cfaC at 242.839 kb on - strand, within cfaC at 242.993 kb on + strand, within cfaC at 243.144 kb on + strand, within cfaC at 243.230 kb on - strand, within cfaC at 243.482 kb on + strand, within cfaC at 243.590 kb on + strand at 243.642 kb on + strand at 243.861 kb on + strand at 243.913 kb on - strand at 243.915 kb on + strand at 243.915 kb on + strand at 243.916 kb on - strand at 243.925 kb on + strand at 244.052 kb on + strand, within cfaB at 244.097 kb on + strand, within cfaB at 244.098 kb on - strand, within cfaB at 244.098 kb on - strand, within cfaB at 244.135 kb on - strand, within cfaB at 244.220 kb on - strand, within cfaB at 244.301 kb on + strand, within cfaB at 244.301 kb on + strand, within cfaB at 244.301 kb on + strand, within cfaB at 244.301 kb on + strand, within cfaB at 244.302 kb on - strand, within cfaB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 240,111 - +0.6 240,323 - cfaD,cfaE BNILDI_01205 0.27 -0.8 240,323 - cfaD,cfaE BNILDI_01205 0.27 -0.3 240,323 - cfaD,cfaE BNILDI_01205 0.27 +0.6 240,334 + cfaD,cfaE BNILDI_01205 0.28 -0.8 240,335 - cfaD,cfaE BNILDI_01205 0.29 +0.0 240,388 + cfaD,cfaE BNILDI_01205 0.33 +0.1 240,454 + cfaD,cfaE BNILDI_01205 0.39 -0.0 240,492 + cfaD,cfaE BNILDI_01205 0.43 +0.6 240,543 - cfaD,cfaE BNILDI_01205 0.48 -0.5 240,560 + cfaD,cfaE BNILDI_01205 0.49 +0.1 240,572 + cfaD,cfaE BNILDI_01205 0.50 -3.1 240,573 - cfaD,cfaE BNILDI_01205 0.50 -0.5 240,698 - cfaD,cfaE BNILDI_01205 0.62 +0.5 240,699 + cfaD,cfaE BNILDI_01205 0.62 -0.7 240,700 - cfaD,cfaE BNILDI_01205 0.62 +2.3 240,700 - cfaD,cfaE BNILDI_01205 0.62 -0.6 240,700 - cfaD,cfaE BNILDI_01205 0.62 -1.3 240,701 + cfaD,cfaE BNILDI_01205 0.62 -2.3 240,701 + cfaD,cfaE BNILDI_01205 0.62 -1.4 240,702 - cfaD,cfaE BNILDI_01205 0.62 -1.2 240,702 - cfaD,cfaE BNILDI_01205 0.62 +1.2 240,702 - cfaD,cfaE BNILDI_01205 0.62 -0.4 240,703 + cfaD,cfaE BNILDI_01205 0.62 -0.9 240,703 + cfaD,cfaE BNILDI_01205 0.62 +0.6 240,703 + cfaD,cfaE BNILDI_01205 0.62 +1.8 240,703 + cfaD,cfaE BNILDI_01205 0.62 -0.8 240,704 - cfaD,cfaE BNILDI_01205 0.62 -0.1 240,704 - cfaD,cfaE BNILDI_01205 0.62 -0.1 240,704 - cfaD,cfaE BNILDI_01205 0.62 -0.6 240,726 - cfaD,cfaE BNILDI_01205 0.64 -0.0 240,738 - cfaD,cfaE BNILDI_01205 0.66 -0.7 240,740 + cfaD,cfaE BNILDI_01205 0.66 -0.5 240,804 - cfaD,cfaE BNILDI_01205 0.72 +0.1 240,804 - cfaD,cfaE BNILDI_01205 0.72 -0.2 240,807 + cfaD,cfaE BNILDI_01205 0.72 -0.4 240,808 - cfaD,cfaE BNILDI_01205 0.72 -1.4 240,874 + cfaD,cfaE BNILDI_01205 0.78 +0.3 240,893 + cfaD,cfaE BNILDI_01205 0.80 +0.1 240,893 + cfaD,cfaE BNILDI_01205 0.80 -0.0 240,894 - cfaD,cfaE BNILDI_01205 0.80 -2.0 240,903 - cfaD,cfaE BNILDI_01205 0.81 +0.4 240,950 + cfaD,cfaE BNILDI_01205 0.85 +0.7 240,950 + cfaD,cfaE BNILDI_01205 0.85 +0.0 240,950 + cfaD,cfaE BNILDI_01205 0.85 -1.3 240,951 - cfaD,cfaE BNILDI_01205 0.85 -0.6 240,951 - cfaD,cfaE BNILDI_01205 0.85 +0.1 240,951 - cfaD,cfaE BNILDI_01205 0.85 +0.2 240,951 - cfaD,cfaE BNILDI_01205 0.85 -1.1 240,952 + cfaD,cfaE BNILDI_01205 0.85 +0.4 240,959 + cfaD,cfaE BNILDI_01205 0.86 -2.1 240,991 + cfaD,cfaE BNILDI_01205 0.89 -1.0 240,991 + cfaD,cfaE BNILDI_01205 0.89 -0.4 241,026 - +0.3 241,152 - +0.4 241,206 + -0.4 241,207 - +0.6 241,219 + +0.3 241,220 - -0.8 241,220 - +0.2 241,225 + +0.6 241,226 - -1.0 241,308 + -1.2 241,343 - +0.8 241,424 + cfaC BNILDI_01210 0.12 +0.6 241,437 + cfaC BNILDI_01210 0.12 -3.2 241,437 + cfaC BNILDI_01210 0.12 +0.1 241,438 - cfaC BNILDI_01210 0.12 +0.6 241,438 - cfaC BNILDI_01210 0.12 -0.7 241,443 + cfaC BNILDI_01210 0.12 +0.4 241,444 - cfaC BNILDI_01210 0.12 -0.9 241,447 + cfaC BNILDI_01210 0.13 +0.7 241,497 - cfaC BNILDI_01210 0.14 -0.7 241,741 + cfaC BNILDI_01210 0.24 -0.3 241,792 + cfaC BNILDI_01210 0.25 -3.7 241,792 + cfaC BNILDI_01210 0.25 +1.4 241,794 + cfaC BNILDI_01210 0.26 -0.6 241,794 + cfaC BNILDI_01210 0.26 +0.3 241,794 + cfaC BNILDI_01210 0.26 +0.5 241,794 + cfaC BNILDI_01210 0.26 -0.7 241,794 + cfaC BNILDI_01210 0.26 -0.1 241,795 - cfaC BNILDI_01210 0.26 +0.4 241,795 - cfaC BNILDI_01210 0.26 -2.6 241,795 - cfaC BNILDI_01210 0.26 +0.3 241,839 + cfaC BNILDI_01210 0.27 +0.0 241,839 + cfaC BNILDI_01210 0.27 -0.5 241,840 - cfaC BNILDI_01210 0.27 -1.1 241,861 - cfaC BNILDI_01210 0.28 +1.3 241,907 + cfaC BNILDI_01210 0.30 +1.1 241,907 + cfaC BNILDI_01210 0.30 -0.4 241,908 - cfaC BNILDI_01210 0.30 +0.3 241,969 + cfaC BNILDI_01210 0.32 -0.5 241,972 - cfaC BNILDI_01210 0.32 +0.1 241,972 - cfaC BNILDI_01210 0.32 -1.6 242,106 + cfaC BNILDI_01210 0.37 -0.0 242,106 + cfaC BNILDI_01210 0.37 +0.1 242,107 - cfaC BNILDI_01210 0.37 -0.9 242,216 + cfaC BNILDI_01210 0.41 -0.0 242,217 - cfaC BNILDI_01210 0.41 +0.0 242,230 + cfaC BNILDI_01210 0.42 +0.6 242,230 + cfaC BNILDI_01210 0.42 +0.0 242,260 + cfaC BNILDI_01210 0.43 -1.9 242,296 + cfaC BNILDI_01210 0.44 -0.0 242,296 + cfaC BNILDI_01210 0.44 +1.6 242,401 + cfaC BNILDI_01210 0.48 +1.0 242,403 + cfaC BNILDI_01210 0.48 -0.3 242,403 + cfaC BNILDI_01210 0.48 -0.7 242,403 + cfaC BNILDI_01210 0.48 -0.9 242,404 - cfaC BNILDI_01210 0.48 +0.4 242,404 - cfaC BNILDI_01210 0.48 +1.9 242,404 - cfaC BNILDI_01210 0.48 -0.5 242,404 - cfaC BNILDI_01210 0.48 -0.7 242,426 - cfaC BNILDI_01210 0.49 -0.1 242,426 - cfaC BNILDI_01210 0.49 +0.0 242,426 - cfaC BNILDI_01210 0.49 -2.4 242,454 + cfaC BNILDI_01210 0.50 +1.7 242,637 + cfaC BNILDI_01210 0.57 +0.9 242,647 - cfaC BNILDI_01210 0.57 +0.0 242,657 + cfaC BNILDI_01210 0.58 +0.8 242,658 - cfaC BNILDI_01210 0.58 -1.6 242,658 - cfaC BNILDI_01210 0.58 -0.2 242,683 - cfaC BNILDI_01210 0.59 +0.1 242,716 + cfaC BNILDI_01210 0.60 +0.0 242,839 - cfaC BNILDI_01210 0.64 +0.2 242,993 + cfaC BNILDI_01210 0.70 -1.2 243,144 + cfaC BNILDI_01210 0.76 +0.2 243,230 - cfaC BNILDI_01210 0.79 +0.1 243,482 + cfaC BNILDI_01210 0.88 -0.0 243,590 + -0.1 243,642 + -0.9 243,861 + -0.8 243,913 - +0.2 243,915 + +1.5 243,915 + +0.0 243,916 - -0.4 243,925 + -0.8 244,052 + cfaB BNILDI_01215 0.33 -0.4 244,097 + cfaB BNILDI_01215 0.42 +0.1 244,098 - cfaB BNILDI_01215 0.43 +0.8 244,098 - cfaB BNILDI_01215 0.43 +0.1 244,135 - cfaB BNILDI_01215 0.50 +0.8 244,220 - cfaB BNILDI_01215 0.67 +0.8 244,301 + cfaB BNILDI_01215 0.83 +1.1 244,301 + cfaB BNILDI_01215 0.83 -0.5 244,301 + cfaB BNILDI_01215 0.83 -0.7 244,301 + cfaB BNILDI_01215 0.83 -3.8 244,302 - cfaB BNILDI_01215 0.83 -0.1
Or see this region's nucleotide sequence