Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_23055 and NOLOHH_23060 are separated by 203 nucleotides NOLOHH_23060 and NOLOHH_23065 are separated by 88 nucleotides NOLOHH_23065 and int are separated by 235 nucleotides int and ybhC are separated by 134 nucleotides
NOLOHH_23055: NOLOHH_23055 - DUF550 domain-containing protein, at 4,534,627 to 4,535,343
_23055
NOLOHH_23060: NOLOHH_23060 - IS1 orfB, at 4,535,547 to 4,535,828
_23060
NOLOHH_23065: NOLOHH_23065 - hypothetical protein, at 4,535,917 to 4,536,084
_23065
NOLOHH_23070: int - Integrase, at 4,536,320 to 4,537,390
int
NOLOHH_23075: ybhC - putative acyl-CoA thioester hydrolase, at 4,537,525 to 4,538,808
ybhC
Position (kb)
4536
4537
4538 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.337 kb on + strand at 4535.338 kb on - strand at 4535.339 kb on + strand at 4535.341 kb on + strand at 4535.342 kb on - strand at 4535.428 kb on + strand at 4535.428 kb on + strand at 4535.444 kb on + strand at 4535.714 kb on + strand, within NOLOHH_23060 at 4535.715 kb on - strand, within NOLOHH_23060 at 4535.758 kb on + strand, within NOLOHH_23060 at 4535.769 kb on + strand, within NOLOHH_23060 at 4535.842 kb on + strand at 4535.846 kb on + strand at 4535.903 kb on + strand at 4535.914 kb on + strand at 4535.914 kb on + strand at 4535.915 kb on - strand at 4535.996 kb on - strand, within NOLOHH_23065 at 4536.024 kb on - strand, within NOLOHH_23065 at 4536.038 kb on + strand, within NOLOHH_23065 at 4536.039 kb on - strand, within NOLOHH_23065 at 4536.105 kb on + strand at 4536.105 kb on + strand at 4536.127 kb on + strand at 4536.127 kb on + strand at 4536.127 kb on + strand at 4536.128 kb on - strand at 4536.128 kb on - strand at 4536.244 kb on + strand at 4536.297 kb on + strand at 4536.368 kb on + strand at 4536.368 kb on + strand at 4536.368 kb on + strand at 4536.368 kb on + strand at 4536.368 kb on + strand at 4536.368 kb on + strand at 4536.369 kb on - strand at 4536.369 kb on - strand at 4536.370 kb on + strand at 4536.370 kb on + strand at 4536.371 kb on - strand at 4536.371 kb on - strand at 4536.372 kb on + strand at 4536.372 kb on + strand at 4536.372 kb on + strand at 4536.372 kb on + strand at 4536.372 kb on + strand at 4536.373 kb on - strand at 4536.373 kb on - strand at 4536.541 kb on + strand, within int at 4536.546 kb on + strand, within int at 4536.593 kb on - strand, within int at 4536.639 kb on + strand, within int at 4536.710 kb on + strand, within int at 4536.711 kb on - strand, within int at 4536.715 kb on - strand, within int at 4536.783 kb on + strand, within int at 4536.784 kb on - strand, within int at 4536.798 kb on + strand, within int at 4536.799 kb on - strand, within int at 4536.844 kb on - strand, within int at 4536.859 kb on + strand, within int at 4536.872 kb on + strand, within int at 4537.001 kb on + strand, within int at 4537.001 kb on + strand, within int at 4537.007 kb on + strand, within int at 4537.032 kb on + strand, within int at 4537.099 kb on + strand, within int at 4537.131 kb on + strand, within int at 4537.132 kb on - strand, within int at 4537.141 kb on + strand, within int at 4537.141 kb on + strand, within int at 4537.141 kb on + strand, within int at 4537.173 kb on + strand, within int at 4537.181 kb on + strand, within int at 4537.182 kb on - strand, within int at 4537.187 kb on - strand, within int at 4537.271 kb on + strand, within int at 4537.271 kb on + strand, within int at 4537.272 kb on - strand, within int at 4537.272 kb on - strand, within int at 4537.284 kb on + strand at 4537.284 kb on + strand at 4537.470 kb on + strand at 4537.697 kb on - strand, within ybhC at 4537.800 kb on - strand, within ybhC at 4537.839 kb on + strand, within ybhC at 4537.839 kb on + strand, within ybhC at 4537.864 kb on + strand, within ybhC at 4537.864 kb on + strand, within ybhC at 4537.865 kb on - strand, within ybhC at 4537.866 kb on + strand, within ybhC at 4537.901 kb on + strand, within ybhC at 4537.901 kb on + strand, within ybhC at 4537.902 kb on - strand, within ybhC at 4537.902 kb on - strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.903 kb on + strand, within ybhC at 4537.904 kb on - strand, within ybhC at 4537.929 kb on + strand, within ybhC at 4537.929 kb on + strand, within ybhC at 4537.941 kb on + strand, within ybhC at 4538.038 kb on + strand, within ybhC at 4538.039 kb on - strand, within ybhC at 4538.039 kb on - strand, within ybhC at 4538.040 kb on + strand, within ybhC at 4538.062 kb on + strand, within ybhC at 4538.064 kb on + strand, within ybhC at 4538.064 kb on + strand, within ybhC at 4538.065 kb on - strand, within ybhC at 4538.068 kb on + strand, within ybhC at 4538.069 kb on - strand, within ybhC at 4538.073 kb on + strand, within ybhC at 4538.192 kb on + strand, within ybhC at 4538.192 kb on + strand, within ybhC at 4538.192 kb on + strand, within ybhC at 4538.192 kb on + strand, within ybhC at 4538.192 kb on + strand, within ybhC at 4538.192 kb on + strand, within ybhC at 4538.244 kb on - strand, within ybhC at 4538.359 kb on + strand, within ybhC at 4538.359 kb on + strand, within ybhC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,535,337 + +0.9 4,535,337 + -2.2 4,535,337 + +0.4 4,535,337 + -4.4 4,535,337 + -2.4 4,535,337 + +1.1 4,535,337 + +1.3 4,535,337 + -3.3 4,535,337 + +1.8 4,535,337 + -1.4 4,535,338 - -2.0 4,535,339 + +1.1 4,535,341 + +1.0 4,535,342 - +1.8 4,535,428 + -2.1 4,535,428 + -2.9 4,535,444 + +0.3 4,535,714 + NOLOHH_23060 0.59 -0.8 4,535,715 - NOLOHH_23060 0.60 -1.3 4,535,758 + NOLOHH_23060 0.75 -3.0 4,535,769 + NOLOHH_23060 0.79 +0.2 4,535,842 + +0.8 4,535,846 + -1.8 4,535,903 + +1.5 4,535,914 + +0.1 4,535,914 + -3.7 4,535,915 - -0.1 4,535,996 - NOLOHH_23065 0.47 +0.5 4,536,024 - NOLOHH_23065 0.64 -4.5 4,536,038 + NOLOHH_23065 0.72 -3.6 4,536,039 - NOLOHH_23065 0.73 -2.8 4,536,105 + +1.9 4,536,105 + -0.2 4,536,127 + -1.2 4,536,127 + -1.2 4,536,127 + +1.5 4,536,128 - +1.1 4,536,128 - -1.2 4,536,244 + -0.0 4,536,297 + -4.8 4,536,368 + +0.0 4,536,368 + +0.3 4,536,368 + -0.4 4,536,368 + -0.4 4,536,368 + -0.9 4,536,368 + -1.1 4,536,369 - -0.8 4,536,369 - -0.8 4,536,370 + -2.7 4,536,370 + +0.3 4,536,371 - +1.5 4,536,371 - -4.1 4,536,372 + -3.1 4,536,372 + -0.1 4,536,372 + -1.3 4,536,372 + +0.8 4,536,372 + -1.3 4,536,373 - -0.2 4,536,373 - -3.1 4,536,541 + int NOLOHH_23070 0.21 +2.0 4,536,546 + int NOLOHH_23070 0.21 -0.5 4,536,593 - int NOLOHH_23070 0.25 +1.5 4,536,639 + int NOLOHH_23070 0.30 -3.1 4,536,710 + int NOLOHH_23070 0.36 +0.3 4,536,711 - int NOLOHH_23070 0.37 +0.2 4,536,715 - int NOLOHH_23070 0.37 +2.0 4,536,783 + int NOLOHH_23070 0.43 -2.7 4,536,784 - int NOLOHH_23070 0.43 +1.7 4,536,798 + int NOLOHH_23070 0.45 -4.1 4,536,799 - int NOLOHH_23070 0.45 +0.6 4,536,844 - int NOLOHH_23070 0.49 -0.1 4,536,859 + int NOLOHH_23070 0.50 +0.5 4,536,872 + int NOLOHH_23070 0.52 +0.5 4,537,001 + int NOLOHH_23070 0.64 -1.6 4,537,001 + int NOLOHH_23070 0.64 -2.6 4,537,007 + int NOLOHH_23070 0.64 -0.1 4,537,032 + int NOLOHH_23070 0.66 +1.0 4,537,099 + int NOLOHH_23070 0.73 +0.8 4,537,131 + int NOLOHH_23070 0.76 -0.7 4,537,132 - int NOLOHH_23070 0.76 -1.2 4,537,141 + int NOLOHH_23070 0.77 +0.9 4,537,141 + int NOLOHH_23070 0.77 -0.3 4,537,141 + int NOLOHH_23070 0.77 +0.4 4,537,173 + int NOLOHH_23070 0.80 -1.7 4,537,181 + int NOLOHH_23070 0.80 -1.8 4,537,182 - int NOLOHH_23070 0.80 -0.3 4,537,187 - int NOLOHH_23070 0.81 -1.3 4,537,271 + int NOLOHH_23070 0.89 -1.1 4,537,271 + int NOLOHH_23070 0.89 -2.6 4,537,272 - int NOLOHH_23070 0.89 -0.4 4,537,272 - int NOLOHH_23070 0.89 -1.6 4,537,284 + +1.1 4,537,284 + -1.7 4,537,470 + -0.1 4,537,697 - ybhC NOLOHH_23075 0.13 -2.7 4,537,800 - ybhC NOLOHH_23075 0.21 -0.0 4,537,839 + ybhC NOLOHH_23075 0.24 -0.5 4,537,839 + ybhC NOLOHH_23075 0.24 +1.4 4,537,864 + ybhC NOLOHH_23075 0.26 +0.8 4,537,864 + ybhC NOLOHH_23075 0.26 +0.5 4,537,865 - ybhC NOLOHH_23075 0.26 +1.9 4,537,866 + ybhC NOLOHH_23075 0.27 -3.8 4,537,901 + ybhC NOLOHH_23075 0.29 -3.6 4,537,901 + ybhC NOLOHH_23075 0.29 -0.4 4,537,902 - ybhC NOLOHH_23075 0.29 -2.4 4,537,902 - ybhC NOLOHH_23075 0.29 -4.2 4,537,903 + ybhC NOLOHH_23075 0.29 -4.0 4,537,903 + ybhC NOLOHH_23075 0.29 -0.7 4,537,903 + ybhC NOLOHH_23075 0.29 +1.4 4,537,903 + ybhC NOLOHH_23075 0.29 -0.7 4,537,903 + ybhC NOLOHH_23075 0.29 -0.4 4,537,903 + ybhC NOLOHH_23075 0.29 -0.4 4,537,903 + ybhC NOLOHH_23075 0.29 -2.7 4,537,903 + ybhC NOLOHH_23075 0.29 +2.0 4,537,903 + ybhC NOLOHH_23075 0.29 +0.4 4,537,903 + ybhC NOLOHH_23075 0.29 +0.3 4,537,903 + ybhC NOLOHH_23075 0.29 +1.5 4,537,904 - ybhC NOLOHH_23075 0.30 -0.5 4,537,929 + ybhC NOLOHH_23075 0.31 +1.4 4,537,929 + ybhC NOLOHH_23075 0.31 -0.5 4,537,941 + ybhC NOLOHH_23075 0.32 +0.1 4,538,038 + ybhC NOLOHH_23075 0.40 -4.0 4,538,039 - ybhC NOLOHH_23075 0.40 +0.9 4,538,039 - ybhC NOLOHH_23075 0.40 -1.0 4,538,040 + ybhC NOLOHH_23075 0.40 +0.8 4,538,062 + ybhC NOLOHH_23075 0.42 -4.2 4,538,064 + ybhC NOLOHH_23075 0.42 -3.7 4,538,064 + ybhC NOLOHH_23075 0.42 -2.4 4,538,065 - ybhC NOLOHH_23075 0.42 -4.2 4,538,068 + ybhC NOLOHH_23075 0.42 +0.2 4,538,069 - ybhC NOLOHH_23075 0.42 +2.0 4,538,073 + ybhC NOLOHH_23075 0.43 -3.3 4,538,192 + ybhC NOLOHH_23075 0.52 -2.4 4,538,192 + ybhC NOLOHH_23075 0.52 +0.1 4,538,192 + ybhC NOLOHH_23075 0.52 +0.5 4,538,192 + ybhC NOLOHH_23075 0.52 +0.9 4,538,192 + ybhC NOLOHH_23075 0.52 +1.2 4,538,192 + ybhC NOLOHH_23075 0.52 +0.4 4,538,244 - ybhC NOLOHH_23075 0.56 -3.9 4,538,359 + ybhC NOLOHH_23075 0.65 +0.2 4,538,359 + ybhC NOLOHH_23075 0.65 -0.5
Or see this region's nucleotide sequence