Strain Fitness in Escherichia coli ECOR27 around NOLOHH_23070

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_23055 and NOLOHH_23060 are separated by 203 nucleotidesNOLOHH_23060 and NOLOHH_23065 are separated by 88 nucleotidesNOLOHH_23065 and int are separated by 235 nucleotidesint and ybhC are separated by 134 nucleotides NOLOHH_23055: NOLOHH_23055 - DUF550 domain-containing protein, at 4,534,627 to 4,535,343 _23055 NOLOHH_23060: NOLOHH_23060 - IS1 orfB, at 4,535,547 to 4,535,828 _23060 NOLOHH_23065: NOLOHH_23065 - hypothetical protein, at 4,535,917 to 4,536,084 _23065 NOLOHH_23070: int - Integrase, at 4,536,320 to 4,537,390 int NOLOHH_23075: ybhC - putative acyl-CoA thioester hydrolase, at 4,537,525 to 4,538,808 ybhC Position (kb) 4536 4537 4538Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.337 kb on + strandat 4535.338 kb on - strandat 4535.339 kb on + strandat 4535.341 kb on + strandat 4535.342 kb on - strandat 4535.428 kb on + strandat 4535.428 kb on + strandat 4535.444 kb on + strandat 4535.714 kb on + strand, within NOLOHH_23060at 4535.715 kb on - strand, within NOLOHH_23060at 4535.758 kb on + strand, within NOLOHH_23060at 4535.769 kb on + strand, within NOLOHH_23060at 4535.842 kb on + strandat 4535.846 kb on + strandat 4535.903 kb on + strandat 4535.914 kb on + strandat 4535.914 kb on + strandat 4535.915 kb on - strandat 4535.996 kb on - strand, within NOLOHH_23065at 4536.024 kb on - strand, within NOLOHH_23065at 4536.038 kb on + strand, within NOLOHH_23065at 4536.039 kb on - strand, within NOLOHH_23065at 4536.105 kb on + strandat 4536.105 kb on + strandat 4536.127 kb on + strandat 4536.127 kb on + strandat 4536.127 kb on + strandat 4536.128 kb on - strandat 4536.128 kb on - strandat 4536.244 kb on + strandat 4536.297 kb on + strandat 4536.368 kb on + strandat 4536.368 kb on + strandat 4536.368 kb on + strandat 4536.368 kb on + strandat 4536.368 kb on + strandat 4536.368 kb on + strandat 4536.369 kb on - strandat 4536.369 kb on - strandat 4536.370 kb on + strandat 4536.370 kb on + strandat 4536.371 kb on - strandat 4536.371 kb on - strandat 4536.372 kb on + strandat 4536.372 kb on + strandat 4536.372 kb on + strandat 4536.372 kb on + strandat 4536.372 kb on + strandat 4536.373 kb on - strandat 4536.373 kb on - strandat 4536.541 kb on + strand, within intat 4536.546 kb on + strand, within intat 4536.593 kb on - strand, within intat 4536.639 kb on + strand, within intat 4536.710 kb on + strand, within intat 4536.711 kb on - strand, within intat 4536.715 kb on - strand, within intat 4536.783 kb on + strand, within intat 4536.784 kb on - strand, within intat 4536.798 kb on + strand, within intat 4536.799 kb on - strand, within intat 4536.844 kb on - strand, within intat 4536.859 kb on + strand, within intat 4536.872 kb on + strand, within intat 4537.001 kb on + strand, within intat 4537.001 kb on + strand, within intat 4537.007 kb on + strand, within intat 4537.032 kb on + strand, within intat 4537.099 kb on + strand, within intat 4537.131 kb on + strand, within intat 4537.132 kb on - strand, within intat 4537.141 kb on + strand, within intat 4537.141 kb on + strand, within intat 4537.141 kb on + strand, within intat 4537.173 kb on + strand, within intat 4537.181 kb on + strand, within intat 4537.182 kb on - strand, within intat 4537.187 kb on - strand, within intat 4537.271 kb on + strand, within intat 4537.271 kb on + strand, within intat 4537.272 kb on - strand, within intat 4537.272 kb on - strand, within intat 4537.284 kb on + strandat 4537.284 kb on + strandat 4537.470 kb on + strandat 4537.697 kb on - strand, within ybhCat 4537.800 kb on - strand, within ybhCat 4537.839 kb on + strand, within ybhCat 4537.839 kb on + strand, within ybhCat 4537.864 kb on + strand, within ybhCat 4537.864 kb on + strand, within ybhCat 4537.865 kb on - strand, within ybhCat 4537.866 kb on + strand, within ybhCat 4537.901 kb on + strand, within ybhCat 4537.901 kb on + strand, within ybhCat 4537.902 kb on - strand, within ybhCat 4537.902 kb on - strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.903 kb on + strand, within ybhCat 4537.904 kb on - strand, within ybhCat 4537.929 kb on + strand, within ybhCat 4537.929 kb on + strand, within ybhCat 4537.941 kb on + strand, within ybhCat 4538.038 kb on + strand, within ybhCat 4538.039 kb on - strand, within ybhCat 4538.039 kb on - strand, within ybhCat 4538.040 kb on + strand, within ybhCat 4538.062 kb on + strand, within ybhCat 4538.064 kb on + strand, within ybhCat 4538.064 kb on + strand, within ybhCat 4538.065 kb on - strand, within ybhCat 4538.068 kb on + strand, within ybhCat 4538.069 kb on - strand, within ybhCat 4538.073 kb on + strand, within ybhCat 4538.192 kb on + strand, within ybhCat 4538.192 kb on + strand, within ybhCat 4538.192 kb on + strand, within ybhCat 4538.192 kb on + strand, within ybhCat 4538.192 kb on + strand, within ybhCat 4538.192 kb on + strand, within ybhCat 4538.244 kb on - strand, within ybhCat 4538.359 kb on + strand, within ybhCat 4538.359 kb on + strand, within ybhC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,535,337 + +0.9
4,535,337 + -2.2
4,535,337 + +0.4
4,535,337 + -4.4
4,535,337 + -2.4
4,535,337 + +1.1
4,535,337 + +1.3
4,535,337 + -3.3
4,535,337 + +1.8
4,535,337 + -1.4
4,535,338 - -2.0
4,535,339 + +1.1
4,535,341 + +1.0
4,535,342 - +1.8
4,535,428 + -2.1
4,535,428 + -2.9
4,535,444 + +0.3
4,535,714 + NOLOHH_23060 0.59 -0.8
4,535,715 - NOLOHH_23060 0.60 -1.3
4,535,758 + NOLOHH_23060 0.75 -3.0
4,535,769 + NOLOHH_23060 0.79 +0.2
4,535,842 + +0.8
4,535,846 + -1.8
4,535,903 + +1.5
4,535,914 + +0.1
4,535,914 + -3.7
4,535,915 - -0.1
4,535,996 - NOLOHH_23065 0.47 +0.5
4,536,024 - NOLOHH_23065 0.64 -4.5
4,536,038 + NOLOHH_23065 0.72 -3.6
4,536,039 - NOLOHH_23065 0.73 -2.8
4,536,105 + +1.9
4,536,105 + -0.2
4,536,127 + -1.2
4,536,127 + -1.2
4,536,127 + +1.5
4,536,128 - +1.1
4,536,128 - -1.2
4,536,244 + -0.0
4,536,297 + -4.8
4,536,368 + +0.0
4,536,368 + +0.3
4,536,368 + -0.4
4,536,368 + -0.4
4,536,368 + -0.9
4,536,368 + -1.1
4,536,369 - -0.8
4,536,369 - -0.8
4,536,370 + -2.7
4,536,370 + +0.3
4,536,371 - +1.5
4,536,371 - -4.1
4,536,372 + -3.1
4,536,372 + -0.1
4,536,372 + -1.3
4,536,372 + +0.8
4,536,372 + -1.3
4,536,373 - -0.2
4,536,373 - -3.1
4,536,541 + int NOLOHH_23070 0.21 +2.0
4,536,546 + int NOLOHH_23070 0.21 -0.5
4,536,593 - int NOLOHH_23070 0.25 +1.5
4,536,639 + int NOLOHH_23070 0.30 -3.1
4,536,710 + int NOLOHH_23070 0.36 +0.3
4,536,711 - int NOLOHH_23070 0.37 +0.2
4,536,715 - int NOLOHH_23070 0.37 +2.0
4,536,783 + int NOLOHH_23070 0.43 -2.7
4,536,784 - int NOLOHH_23070 0.43 +1.7
4,536,798 + int NOLOHH_23070 0.45 -4.1
4,536,799 - int NOLOHH_23070 0.45 +0.6
4,536,844 - int NOLOHH_23070 0.49 -0.1
4,536,859 + int NOLOHH_23070 0.50 +0.5
4,536,872 + int NOLOHH_23070 0.52 +0.5
4,537,001 + int NOLOHH_23070 0.64 -1.6
4,537,001 + int NOLOHH_23070 0.64 -2.6
4,537,007 + int NOLOHH_23070 0.64 -0.1
4,537,032 + int NOLOHH_23070 0.66 +1.0
4,537,099 + int NOLOHH_23070 0.73 +0.8
4,537,131 + int NOLOHH_23070 0.76 -0.7
4,537,132 - int NOLOHH_23070 0.76 -1.2
4,537,141 + int NOLOHH_23070 0.77 +0.9
4,537,141 + int NOLOHH_23070 0.77 -0.3
4,537,141 + int NOLOHH_23070 0.77 +0.4
4,537,173 + int NOLOHH_23070 0.80 -1.7
4,537,181 + int NOLOHH_23070 0.80 -1.8
4,537,182 - int NOLOHH_23070 0.80 -0.3
4,537,187 - int NOLOHH_23070 0.81 -1.3
4,537,271 + int NOLOHH_23070 0.89 -1.1
4,537,271 + int NOLOHH_23070 0.89 -2.6
4,537,272 - int NOLOHH_23070 0.89 -0.4
4,537,272 - int NOLOHH_23070 0.89 -1.6
4,537,284 + +1.1
4,537,284 + -1.7
4,537,470 + -0.1
4,537,697 - ybhC NOLOHH_23075 0.13 -2.7
4,537,800 - ybhC NOLOHH_23075 0.21 -0.0
4,537,839 + ybhC NOLOHH_23075 0.24 -0.5
4,537,839 + ybhC NOLOHH_23075 0.24 +1.4
4,537,864 + ybhC NOLOHH_23075 0.26 +0.8
4,537,864 + ybhC NOLOHH_23075 0.26 +0.5
4,537,865 - ybhC NOLOHH_23075 0.26 +1.9
4,537,866 + ybhC NOLOHH_23075 0.27 -3.8
4,537,901 + ybhC NOLOHH_23075 0.29 -3.6
4,537,901 + ybhC NOLOHH_23075 0.29 -0.4
4,537,902 - ybhC NOLOHH_23075 0.29 -2.4
4,537,902 - ybhC NOLOHH_23075 0.29 -4.2
4,537,903 + ybhC NOLOHH_23075 0.29 -4.0
4,537,903 + ybhC NOLOHH_23075 0.29 -0.7
4,537,903 + ybhC NOLOHH_23075 0.29 +1.4
4,537,903 + ybhC NOLOHH_23075 0.29 -0.7
4,537,903 + ybhC NOLOHH_23075 0.29 -0.4
4,537,903 + ybhC NOLOHH_23075 0.29 -0.4
4,537,903 + ybhC NOLOHH_23075 0.29 -2.7
4,537,903 + ybhC NOLOHH_23075 0.29 +2.0
4,537,903 + ybhC NOLOHH_23075 0.29 +0.4
4,537,903 + ybhC NOLOHH_23075 0.29 +0.3
4,537,903 + ybhC NOLOHH_23075 0.29 +1.5
4,537,904 - ybhC NOLOHH_23075 0.30 -0.5
4,537,929 + ybhC NOLOHH_23075 0.31 +1.4
4,537,929 + ybhC NOLOHH_23075 0.31 -0.5
4,537,941 + ybhC NOLOHH_23075 0.32 +0.1
4,538,038 + ybhC NOLOHH_23075 0.40 -4.0
4,538,039 - ybhC NOLOHH_23075 0.40 +0.9
4,538,039 - ybhC NOLOHH_23075 0.40 -1.0
4,538,040 + ybhC NOLOHH_23075 0.40 +0.8
4,538,062 + ybhC NOLOHH_23075 0.42 -4.2
4,538,064 + ybhC NOLOHH_23075 0.42 -3.7
4,538,064 + ybhC NOLOHH_23075 0.42 -2.4
4,538,065 - ybhC NOLOHH_23075 0.42 -4.2
4,538,068 + ybhC NOLOHH_23075 0.42 +0.2
4,538,069 - ybhC NOLOHH_23075 0.42 +2.0
4,538,073 + ybhC NOLOHH_23075 0.43 -3.3
4,538,192 + ybhC NOLOHH_23075 0.52 -2.4
4,538,192 + ybhC NOLOHH_23075 0.52 +0.1
4,538,192 + ybhC NOLOHH_23075 0.52 +0.5
4,538,192 + ybhC NOLOHH_23075 0.52 +0.9
4,538,192 + ybhC NOLOHH_23075 0.52 +1.2
4,538,192 + ybhC NOLOHH_23075 0.52 +0.4
4,538,244 - ybhC NOLOHH_23075 0.56 -3.9
4,538,359 + ybhC NOLOHH_23075 0.65 +0.2
4,538,359 + ybhC NOLOHH_23075 0.65 -0.5

Or see this region's nucleotide sequence