Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trg and mokB are separated by 340 nucleotides mokB and yncP are separated by 17 nucleotides yncP and ydcA are separated by 25 nucleotides ydcA and cybB are separated by 244 nucleotides cybB and gap are separated by 188 nucleotides
NOLOHH_19340: trg - methyl-accepting chemotaxis protein Trg, at 3,811,932 to 3,813,572
trg
NOLOHH_19350: mokB - IS3 family transposase, at 3,813,913 to 3,814,080
mokB
NOLOHH_19355: yncP - Protein YncP, at 3,814,098 to 3,814,166
yncP
NOLOHH_19360: ydcA - Uncharacterized protein YdcA, at 3,814,192 to 3,814,365
ydcA
NOLOHH_19370: cybB - cytochrome b561, at 3,814,610 to 3,815,140
cybB
NOLOHH_19375: gap - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,815,329 to 3,816,330
gap
Position (kb)
3814
3815 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3813.413 kb on + strand at 3813.452 kb on - strand at 3813.480 kb on + strand at 3813.567 kb on - strand at 3813.633 kb on + strand at 3813.633 kb on + strand at 3813.637 kb on + strand at 3813.637 kb on + strand at 3813.677 kb on + strand at 3813.921 kb on - strand at 3813.921 kb on - strand at 3813.921 kb on - strand at 3813.921 kb on - strand at 3813.935 kb on + strand, within mokB at 3814.007 kb on - strand, within mokB at 3814.198 kb on - strand at 3814.367 kb on + strand at 3814.392 kb on - strand at 3814.392 kb on - strand at 3814.411 kb on + strand at 3814.412 kb on - strand at 3814.412 kb on - strand at 3814.470 kb on + strand at 3814.663 kb on - strand, within cybB at 3814.748 kb on - strand, within cybB at 3814.748 kb on - strand, within cybB at 3814.748 kb on - strand, within cybB at 3814.825 kb on - strand, within cybB at 3814.825 kb on - strand, within cybB at 3814.825 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB at 3814.926 kb on - strand, within cybB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,813,413 + +1.4 3,813,452 - -2.1 3,813,480 + -0.4 3,813,567 - +0.6 3,813,633 + +0.9 3,813,633 + -2.0 3,813,637 + -0.6 3,813,637 + +1.1 3,813,677 + -1.5 3,813,921 - +0.2 3,813,921 - -2.2 3,813,921 - +0.2 3,813,921 - -3.6 3,813,935 + mokB NOLOHH_19350 0.13 +0.1 3,814,007 - mokB NOLOHH_19350 0.56 +0.6 3,814,198 - -0.4 3,814,367 + -2.3 3,814,392 - -2.8 3,814,392 - +0.0 3,814,411 + -1.2 3,814,412 - -0.5 3,814,412 - -0.7 3,814,470 + +2.8 3,814,663 - cybB NOLOHH_19370 0.10 -1.8 3,814,748 - cybB NOLOHH_19370 0.26 +2.2 3,814,748 - cybB NOLOHH_19370 0.26 -1.5 3,814,748 - cybB NOLOHH_19370 0.26 -0.4 3,814,825 - cybB NOLOHH_19370 0.40 -1.8 3,814,825 - cybB NOLOHH_19370 0.40 +0.3 3,814,825 - cybB NOLOHH_19370 0.40 -3.2 3,814,926 - cybB NOLOHH_19370 0.60 -2.2 3,814,926 - cybB NOLOHH_19370 0.60 -2.6 3,814,926 - cybB NOLOHH_19370 0.60 -3.0 3,814,926 - cybB NOLOHH_19370 0.60 -2.7
Or see this region's nucleotide sequence