Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14540

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_14535 and NOLOHH_14540 are separated by 190 nucleotidesNOLOHH_14540 and elaA are separated by 64 nucleotideselaA and elaB are separated by 54 nucleotideselaB and menF are separated by 78 nucleotides NOLOHH_14535: NOLOHH_14535 - ElaD/SseL family deubiquitinase, at 2,834,122 to 2,834,865 _14535 NOLOHH_14540: NOLOHH_14540 - ribonuclease BN, at 2,835,056 to 2,835,973 _14540 NOLOHH_14545: elaA - GNAT family N-acetyltransferase, at 2,836,038 to 2,836,499 elaA NOLOHH_14550: elaB - stress response protein ElaB, at 2,836,554 to 2,836,859 elaB NOLOHH_14555: menF - isochorismate synthase MenF, at 2,836,938 to 2,838,233 menF Position (kb) 2835 2836Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2834.289 kb on + strand, within NOLOHH_14535at 2834.506 kb on + strand, within NOLOHH_14535at 2834.843 kb on + strandat 2834.955 kb on + strandat 2834.956 kb on - strandat 2834.976 kb on + strandat 2834.996 kb on + strandat 2834.996 kb on + strandat 2834.996 kb on + strandat 2835.047 kb on + strandat 2835.057 kb on + strandat 2835.123 kb on - strandat 2835.176 kb on + strand, within NOLOHH_14540at 2835.224 kb on - strand, within NOLOHH_14540at 2835.229 kb on + strand, within NOLOHH_14540at 2835.264 kb on - strand, within NOLOHH_14540at 2835.264 kb on - strand, within NOLOHH_14540at 2835.266 kb on - strand, within NOLOHH_14540at 2835.380 kb on + strand, within NOLOHH_14540at 2835.381 kb on - strand, within NOLOHH_14540at 2835.384 kb on + strand, within NOLOHH_14540at 2835.441 kb on - strand, within NOLOHH_14540at 2835.498 kb on - strand, within NOLOHH_14540at 2835.498 kb on - strand, within NOLOHH_14540at 2835.700 kb on - strand, within NOLOHH_14540at 2835.700 kb on - strand, within NOLOHH_14540at 2835.730 kb on + strand, within NOLOHH_14540at 2835.730 kb on + strand, within NOLOHH_14540at 2835.731 kb on - strand, within NOLOHH_14540at 2835.833 kb on + strand, within NOLOHH_14540at 2836.008 kb on + strandat 2836.009 kb on - strandat 2836.009 kb on - strandat 2836.009 kb on - strandat 2836.010 kb on + strandat 2836.010 kb on + strandat 2836.011 kb on - strandat 2836.011 kb on - strandat 2836.017 kb on + strandat 2836.017 kb on + strandat 2836.017 kb on + strandat 2836.018 kb on - strandat 2836.018 kb on - strandat 2836.018 kb on - strandat 2836.018 kb on - strandat 2836.018 kb on - strandat 2836.023 kb on + strandat 2836.037 kb on + strandat 2836.037 kb on + strandat 2836.038 kb on - strandat 2836.089 kb on + strand, within elaAat 2836.221 kb on + strand, within elaAat 2836.267 kb on + strand, within elaAat 2836.328 kb on + strand, within elaAat 2836.364 kb on + strand, within elaAat 2836.407 kb on + strand, within elaAat 2836.408 kb on - strand, within elaAat 2836.443 kb on + strand, within elaAat 2836.443 kb on + strand, within elaAat 2836.443 kb on + strand, within elaAat 2836.515 kb on + strandat 2836.517 kb on + strandat 2836.517 kb on + strandat 2836.518 kb on - strandat 2836.518 kb on - strandat 2836.518 kb on - strandat 2836.518 kb on - strandat 2836.521 kb on + strandat 2836.521 kb on + strandat 2836.534 kb on + strandat 2836.534 kb on + strandat 2836.574 kb on + strandat 2836.574 kb on + strandat 2836.580 kb on + strandat 2836.580 kb on + strandat 2836.580 kb on + strandat 2836.659 kb on + strand, within elaBat 2836.659 kb on + strand, within elaBat 2836.659 kb on + strand, within elaBat 2836.734 kb on + strand, within elaBat 2836.734 kb on + strand, within elaBat 2836.734 kb on + strand, within elaBat 2836.734 kb on + strand, within elaBat 2836.737 kb on + strand, within elaBat 2836.737 kb on + strand, within elaBat 2836.737 kb on + strand, within elaBat 2836.834 kb on + strandat 2836.834 kb on + strandat 2836.834 kb on + strandat 2836.868 kb on + strandat 2836.905 kb on - strandat 2836.906 kb on + strandat 2836.907 kb on - strandat 2836.921 kb on - strandat 2836.949 kb on + strandat 2836.949 kb on + strandat 2836.949 kb on + strandat 2836.949 kb on + strandat 2836.950 kb on - strandat 2836.950 kb on - strandat 2836.950 kb on - strandat 2836.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,834,289 + NOLOHH_14535 0.22 -0.1
2,834,506 + NOLOHH_14535 0.52 -3.4
2,834,843 + -4.2
2,834,955 + -1.4
2,834,956 - +0.7
2,834,976 + -2.2
2,834,996 + -1.5
2,834,996 + +2.1
2,834,996 + +1.6
2,835,047 + +0.7
2,835,057 + -3.7
2,835,123 - -2.4
2,835,176 + NOLOHH_14540 0.13 +1.9
2,835,224 - NOLOHH_14540 0.18 -3.8
2,835,229 + NOLOHH_14540 0.19 +0.5
2,835,264 - NOLOHH_14540 0.23 -0.7
2,835,264 - NOLOHH_14540 0.23 -1.7
2,835,266 - NOLOHH_14540 0.23 -0.3
2,835,380 + NOLOHH_14540 0.35 -1.1
2,835,381 - NOLOHH_14540 0.35 -0.4
2,835,384 + NOLOHH_14540 0.36 -2.6
2,835,441 - NOLOHH_14540 0.42 -2.1
2,835,498 - NOLOHH_14540 0.48 -1.7
2,835,498 - NOLOHH_14540 0.48 +0.9
2,835,700 - NOLOHH_14540 0.70 -0.2
2,835,700 - NOLOHH_14540 0.70 -2.4
2,835,730 + NOLOHH_14540 0.73 -1.2
2,835,730 + NOLOHH_14540 0.73 -0.8
2,835,731 - NOLOHH_14540 0.74 -0.1
2,835,833 + NOLOHH_14540 0.85 +0.5
2,836,008 + +0.4
2,836,009 - -1.0
2,836,009 - -3.3
2,836,009 - +0.2
2,836,010 + +1.9
2,836,010 + +0.8
2,836,011 - +1.3
2,836,011 - +0.7
2,836,017 + -2.2
2,836,017 + -0.9
2,836,017 + -0.3
2,836,018 - -1.1
2,836,018 - -1.8
2,836,018 - +0.4
2,836,018 - -1.6
2,836,018 - +0.9
2,836,023 + +0.3
2,836,037 + +1.7
2,836,037 + -2.6
2,836,038 - +1.1
2,836,089 + elaA NOLOHH_14545 0.11 +1.8
2,836,221 + elaA NOLOHH_14545 0.40 -0.3
2,836,267 + elaA NOLOHH_14545 0.50 -1.5
2,836,328 + elaA NOLOHH_14545 0.63 -0.4
2,836,364 + elaA NOLOHH_14545 0.71 +1.5
2,836,407 + elaA NOLOHH_14545 0.80 -1.7
2,836,408 - elaA NOLOHH_14545 0.80 +0.5
2,836,443 + elaA NOLOHH_14545 0.88 -4.2
2,836,443 + elaA NOLOHH_14545 0.88 -4.2
2,836,443 + elaA NOLOHH_14545 0.88 +0.9
2,836,515 + +0.0
2,836,517 + +0.6
2,836,517 + +0.8
2,836,518 - +0.8
2,836,518 - -0.3
2,836,518 - -3.9
2,836,518 - -1.8
2,836,521 + -3.9
2,836,521 + +2.1
2,836,534 + -4.0
2,836,534 + +0.6
2,836,574 + -3.6
2,836,574 + +0.9
2,836,580 + -0.4
2,836,580 + +1.3
2,836,580 + +1.4
2,836,659 + elaB NOLOHH_14550 0.34 +1.0
2,836,659 + elaB NOLOHH_14550 0.34 +0.6
2,836,659 + elaB NOLOHH_14550 0.34 +0.8
2,836,734 + elaB NOLOHH_14550 0.59 +0.3
2,836,734 + elaB NOLOHH_14550 0.59 -2.7
2,836,734 + elaB NOLOHH_14550 0.59 +0.2
2,836,734 + elaB NOLOHH_14550 0.59 +0.6
2,836,737 + elaB NOLOHH_14550 0.60 -0.2
2,836,737 + elaB NOLOHH_14550 0.60 -0.2
2,836,737 + elaB NOLOHH_14550 0.60 +1.6
2,836,834 + -0.3
2,836,834 + -2.8
2,836,834 + -0.8
2,836,868 + -0.5
2,836,905 - -2.9
2,836,906 + -3.8
2,836,907 - +1.2
2,836,921 - +1.3
2,836,949 + +0.5
2,836,949 + +0.9
2,836,949 + -1.9
2,836,949 + +0.3
2,836,950 - +0.3
2,836,950 - +0.8
2,836,950 - -2.0
2,836,953 - +1.9

Or see this region's nucleotide sequence