Strain Fitness in Escherichia coli ECOR27 around NOLOHH_04445

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaidB and yjfC are separated by 83 nucleotidesyjfC and yjfM are separated by 2 nucleotidesyjfM and yjfL are separated by 9 nucleotides NOLOHH_04440: aidB - isovaleryl-CoA dehydrogenase, at 802,996 to 804,621 aidB NOLOHH_04445: yjfC - Putative acid--amine ligase YjfC, at 804,705 to 805,868 yjfC NOLOHH_04450: yjfM - Uncharacterized protein YjfM, at 805,871 to 806,509 yjfM NOLOHH_04455: yjfL - UPF0719 inner membrane protein YjfL, at 806,519 to 806,917 yjfL Position (kb) 804 805 806Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 803.844 kb on + strand, within aidBat 803.844 kb on + strand, within aidBat 803.844 kb on + strand, within aidBat 803.982 kb on + strand, within aidBat 803.982 kb on + strand, within aidBat 803.982 kb on + strand, within aidBat 803.982 kb on + strand, within aidBat 803.983 kb on - strand, within aidBat 803.983 kb on - strand, within aidBat 803.983 kb on - strand, within aidBat 804.115 kb on + strand, within aidBat 804.115 kb on + strand, within aidBat 804.115 kb on + strand, within aidBat 804.116 kb on - strand, within aidBat 804.116 kb on - strand, within aidBat 804.128 kb on + strand, within aidBat 804.184 kb on + strand, within aidBat 804.185 kb on - strand, within aidBat 804.259 kb on - strand, within aidBat 804.333 kb on + strand, within aidBat 804.334 kb on - strand, within aidBat 804.334 kb on - strand, within aidBat 804.334 kb on - strand, within aidBat 804.337 kb on + strand, within aidBat 804.337 kb on + strand, within aidBat 804.337 kb on + strand, within aidBat 804.416 kb on - strand, within aidBat 804.563 kb on - strandat 804.653 kb on + strandat 804.653 kb on + strandat 804.654 kb on - strandat 804.654 kb on - strandat 804.657 kb on - strandat 804.695 kb on + strandat 804.696 kb on - strandat 804.696 kb on - strandat 804.718 kb on + strandat 804.719 kb on - strandat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.823 kb on + strand, within yjfCat 804.824 kb on - strand, within yjfCat 804.824 kb on - strand, within yjfCat 804.824 kb on - strand, within yjfCat 804.824 kb on - strand, within yjfCat 804.824 kb on - strand, within yjfCat 804.824 kb on - strand, within yjfCat 804.863 kb on - strand, within yjfCat 804.863 kb on - strand, within yjfCat 804.955 kb on + strand, within yjfCat 804.956 kb on - strand, within yjfCat 804.966 kb on - strand, within yjfCat 804.974 kb on - strand, within yjfCat 804.974 kb on - strand, within yjfCat 805.076 kb on + strand, within yjfCat 805.077 kb on - strand, within yjfCat 805.080 kb on - strand, within yjfCat 805.088 kb on + strand, within yjfCat 805.181 kb on + strand, within yjfCat 805.222 kb on - strand, within yjfCat 805.255 kb on + strand, within yjfCat 805.255 kb on + strand, within yjfCat 805.256 kb on - strand, within yjfCat 805.256 kb on - strand, within yjfCat 805.256 kb on - strand, within yjfCat 805.259 kb on + strand, within yjfCat 805.259 kb on + strand, within yjfCat 805.303 kb on + strand, within yjfCat 805.304 kb on - strand, within yjfCat 805.304 kb on - strand, within yjfCat 805.304 kb on - strand, within yjfCat 805.304 kb on - strand, within yjfCat 805.313 kb on + strand, within yjfCat 805.369 kb on + strand, within yjfCat 805.369 kb on + strand, within yjfCat 805.369 kb on + strand, within yjfCat 805.379 kb on + strand, within yjfCat 805.414 kb on + strand, within yjfCat 805.415 kb on - strand, within yjfCat 805.492 kb on + strand, within yjfCat 805.492 kb on + strand, within yjfCat 805.492 kb on + strand, within yjfCat 805.493 kb on - strand, within yjfCat 805.493 kb on - strand, within yjfCat 805.519 kb on + strand, within yjfCat 805.520 kb on - strand, within yjfCat 805.574 kb on - strand, within yjfCat 805.621 kb on + strand, within yjfCat 805.622 kb on - strand, within yjfCat 805.748 kb on + strand, within yjfCat 805.749 kb on - strand, within yjfCat 805.797 kb on - strandat 805.949 kb on - strand, within yjfMat 805.966 kb on - strand, within yjfMat 805.966 kb on - strand, within yjfMat 805.966 kb on - strand, within yjfMat 806.001 kb on + strand, within yjfMat 806.061 kb on + strand, within yjfMat 806.061 kb on + strand, within yjfMat 806.087 kb on - strand, within yjfMat 806.151 kb on + strand, within yjfMat 806.152 kb on - strand, within yjfMat 806.170 kb on + strand, within yjfMat 806.171 kb on - strand, within yjfMat 806.171 kb on - strand, within yjfMat 806.171 kb on - strand, within yjfMat 806.171 kb on - strand, within yjfMat 806.194 kb on + strand, within yjfMat 806.195 kb on - strand, within yjfMat 806.263 kb on + strand, within yjfMat 806.264 kb on - strand, within yjfMat 806.278 kb on + strand, within yjfMat 806.390 kb on + strand, within yjfMat 806.391 kb on - strand, within yjfMat 806.603 kb on - strand, within yjfLat 806.631 kb on + strand, within yjfLat 806.631 kb on + strand, within yjfLat 806.632 kb on - strand, within yjfLat 806.632 kb on - strand, within yjfLat 806.694 kb on + strand, within yjfL

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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803,844 + aidB NOLOHH_04440 0.52 -1.0
803,844 + aidB NOLOHH_04440 0.52 -0.9
803,844 + aidB NOLOHH_04440 0.52 +1.8
803,982 + aidB NOLOHH_04440 0.61 -0.0
803,982 + aidB NOLOHH_04440 0.61 +2.3
803,982 + aidB NOLOHH_04440 0.61 +0.2
803,982 + aidB NOLOHH_04440 0.61 +1.3
803,983 - aidB NOLOHH_04440 0.61 -0.4
803,983 - aidB NOLOHH_04440 0.61 +0.0
803,983 - aidB NOLOHH_04440 0.61 +0.8
804,115 + aidB NOLOHH_04440 0.69 +0.1
804,115 + aidB NOLOHH_04440 0.69 +1.1
804,115 + aidB NOLOHH_04440 0.69 -0.1
804,116 - aidB NOLOHH_04440 0.69 -4.2
804,116 - aidB NOLOHH_04440 0.69 +1.8
804,128 + aidB NOLOHH_04440 0.70 +0.1
804,184 + aidB NOLOHH_04440 0.73 +0.3
804,185 - aidB NOLOHH_04440 0.73 +0.9
804,259 - aidB NOLOHH_04440 0.78 -1.7
804,333 + aidB NOLOHH_04440 0.82 +0.7
804,334 - aidB NOLOHH_04440 0.82 +0.8
804,334 - aidB NOLOHH_04440 0.82 -0.0
804,334 - aidB NOLOHH_04440 0.82 +0.1
804,337 + aidB NOLOHH_04440 0.82 -0.1
804,337 + aidB NOLOHH_04440 0.82 +0.1
804,337 + aidB NOLOHH_04440 0.82 -1.0
804,416 - aidB NOLOHH_04440 0.87 +1.2
804,563 - -2.2
804,653 + -0.9
804,653 + +1.0
804,654 - -0.5
804,654 - +0.5
804,657 - -0.8
804,695 + -3.9
804,696 - +1.3
804,696 - -0.6
804,718 + -0.0
804,719 - +1.8
804,823 + yjfC NOLOHH_04445 0.10 -1.9
804,823 + yjfC NOLOHH_04445 0.10 -0.1
804,823 + yjfC NOLOHH_04445 0.10 +1.7
804,823 + yjfC NOLOHH_04445 0.10 -0.4
804,823 + yjfC NOLOHH_04445 0.10 +1.2
804,823 + yjfC NOLOHH_04445 0.10 +0.4
804,823 + yjfC NOLOHH_04445 0.10 -0.7
804,823 + yjfC NOLOHH_04445 0.10 -1.6
804,824 - yjfC NOLOHH_04445 0.10 +0.5
804,824 - yjfC NOLOHH_04445 0.10 -4.3
804,824 - yjfC NOLOHH_04445 0.10 +0.4
804,824 - yjfC NOLOHH_04445 0.10 -1.4
804,824 - yjfC NOLOHH_04445 0.10 -1.6
804,824 - yjfC NOLOHH_04445 0.10 +1.1
804,863 - yjfC NOLOHH_04445 0.14 +0.1
804,863 - yjfC NOLOHH_04445 0.14 +0.0
804,955 + yjfC NOLOHH_04445 0.21 -0.1
804,956 - yjfC NOLOHH_04445 0.22 +0.9
804,966 - yjfC NOLOHH_04445 0.22 -0.8
804,974 - yjfC NOLOHH_04445 0.23 -2.1
804,974 - yjfC NOLOHH_04445 0.23 -0.4
805,076 + yjfC NOLOHH_04445 0.32 -0.3
805,077 - yjfC NOLOHH_04445 0.32 +1.6
805,080 - yjfC NOLOHH_04445 0.32 +1.6
805,088 + yjfC NOLOHH_04445 0.33 +2.7
805,181 + yjfC NOLOHH_04445 0.41 -3.1
805,222 - yjfC NOLOHH_04445 0.44 -1.1
805,255 + yjfC NOLOHH_04445 0.47 +0.4
805,255 + yjfC NOLOHH_04445 0.47 -4.4
805,256 - yjfC NOLOHH_04445 0.47 -0.1
805,256 - yjfC NOLOHH_04445 0.47 +0.1
805,256 - yjfC NOLOHH_04445 0.47 -0.4
805,259 + yjfC NOLOHH_04445 0.48 -0.4
805,259 + yjfC NOLOHH_04445 0.48 -4.3
805,303 + yjfC NOLOHH_04445 0.51 -3.7
805,304 - yjfC NOLOHH_04445 0.51 -4.6
805,304 - yjfC NOLOHH_04445 0.51 -1.3
805,304 - yjfC NOLOHH_04445 0.51 +0.9
805,304 - yjfC NOLOHH_04445 0.51 +0.9
805,313 + yjfC NOLOHH_04445 0.52 +1.2
805,369 + yjfC NOLOHH_04445 0.57 +1.2
805,369 + yjfC NOLOHH_04445 0.57 +0.8
805,369 + yjfC NOLOHH_04445 0.57 -0.4
805,379 + yjfC NOLOHH_04445 0.58 -0.9
805,414 + yjfC NOLOHH_04445 0.61 +0.3
805,415 - yjfC NOLOHH_04445 0.61 -5.0
805,492 + yjfC NOLOHH_04445 0.68 +1.7
805,492 + yjfC NOLOHH_04445 0.68 -0.6
805,492 + yjfC NOLOHH_04445 0.68 -4.0
805,493 - yjfC NOLOHH_04445 0.68 -3.3
805,493 - yjfC NOLOHH_04445 0.68 -2.6
805,519 + yjfC NOLOHH_04445 0.70 +0.1
805,520 - yjfC NOLOHH_04445 0.70 -0.0
805,574 - yjfC NOLOHH_04445 0.75 -0.1
805,621 + yjfC NOLOHH_04445 0.79 -1.5
805,622 - yjfC NOLOHH_04445 0.79 -3.3
805,748 + yjfC NOLOHH_04445 0.90 +0.5
805,749 - yjfC NOLOHH_04445 0.90 -4.4
805,797 - -1.1
805,949 - yjfM NOLOHH_04450 0.12 +1.2
805,966 - yjfM NOLOHH_04450 0.15 -0.5
805,966 - yjfM NOLOHH_04450 0.15 +0.6
805,966 - yjfM NOLOHH_04450 0.15 -0.4
806,001 + yjfM NOLOHH_04450 0.20 -2.4
806,061 + yjfM NOLOHH_04450 0.30 +0.9
806,061 + yjfM NOLOHH_04450 0.30 +0.9
806,087 - yjfM NOLOHH_04450 0.34 -2.7
806,151 + yjfM NOLOHH_04450 0.44 +1.5
806,152 - yjfM NOLOHH_04450 0.44 +0.1
806,170 + yjfM NOLOHH_04450 0.47 +0.8
806,171 - yjfM NOLOHH_04450 0.47 +0.8
806,171 - yjfM NOLOHH_04450 0.47 +0.7
806,171 - yjfM NOLOHH_04450 0.47 +0.2
806,171 - yjfM NOLOHH_04450 0.47 +1.2
806,194 + yjfM NOLOHH_04450 0.51 +1.0
806,195 - yjfM NOLOHH_04450 0.51 -3.8
806,263 + yjfM NOLOHH_04450 0.61 -0.5
806,264 - yjfM NOLOHH_04450 0.62 +0.9
806,278 + yjfM NOLOHH_04450 0.64 +0.2
806,390 + yjfM NOLOHH_04450 0.81 +1.0
806,391 - yjfM NOLOHH_04450 0.81 -4.2
806,603 - yjfL NOLOHH_04455 0.21 +2.1
806,631 + yjfL NOLOHH_04455 0.28 +0.5
806,631 + yjfL NOLOHH_04455 0.28 +0.4
806,632 - yjfL NOLOHH_04455 0.28 +1.0
806,632 - yjfL NOLOHH_04455 0.28 +0.6
806,694 + yjfL NOLOHH_04455 0.44 +0.7

Or see this region's nucleotide sequence