Strain Fitness in Escherichia coli ECOR27 around NOLOHH_04445
Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | D-Glucose |
---|---|---|---|---|---|
remove | |||||
803,844 | + | aidB | NOLOHH_04440 | 0.52 | -1.0 |
803,844 | + | aidB | NOLOHH_04440 | 0.52 | -0.9 |
803,844 | + | aidB | NOLOHH_04440 | 0.52 | +1.8 |
803,982 | + | aidB | NOLOHH_04440 | 0.61 | -0.0 |
803,982 | + | aidB | NOLOHH_04440 | 0.61 | +2.3 |
803,982 | + | aidB | NOLOHH_04440 | 0.61 | +0.2 |
803,982 | + | aidB | NOLOHH_04440 | 0.61 | +1.3 |
803,983 | - | aidB | NOLOHH_04440 | 0.61 | -0.4 |
803,983 | - | aidB | NOLOHH_04440 | 0.61 | +0.0 |
803,983 | - | aidB | NOLOHH_04440 | 0.61 | +0.8 |
804,115 | + | aidB | NOLOHH_04440 | 0.69 | +0.1 |
804,115 | + | aidB | NOLOHH_04440 | 0.69 | +1.1 |
804,115 | + | aidB | NOLOHH_04440 | 0.69 | -0.1 |
804,116 | - | aidB | NOLOHH_04440 | 0.69 | -4.2 |
804,116 | - | aidB | NOLOHH_04440 | 0.69 | +1.8 |
804,128 | + | aidB | NOLOHH_04440 | 0.70 | +0.1 |
804,184 | + | aidB | NOLOHH_04440 | 0.73 | +0.3 |
804,185 | - | aidB | NOLOHH_04440 | 0.73 | +0.9 |
804,259 | - | aidB | NOLOHH_04440 | 0.78 | -1.7 |
804,333 | + | aidB | NOLOHH_04440 | 0.82 | +0.7 |
804,334 | - | aidB | NOLOHH_04440 | 0.82 | +0.8 |
804,334 | - | aidB | NOLOHH_04440 | 0.82 | -0.0 |
804,334 | - | aidB | NOLOHH_04440 | 0.82 | +0.1 |
804,337 | + | aidB | NOLOHH_04440 | 0.82 | -0.1 |
804,337 | + | aidB | NOLOHH_04440 | 0.82 | +0.1 |
804,337 | + | aidB | NOLOHH_04440 | 0.82 | -1.0 |
804,416 | - | aidB | NOLOHH_04440 | 0.87 | +1.2 |
804,563 | - | -2.2 | |||
804,653 | + | -0.9 | |||
804,653 | + | +1.0 | |||
804,654 | - | -0.5 | |||
804,654 | - | +0.5 | |||
804,657 | - | -0.8 | |||
804,695 | + | -3.9 | |||
804,696 | - | +1.3 | |||
804,696 | - | -0.6 | |||
804,718 | + | -0.0 | |||
804,719 | - | +1.8 | |||
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | -1.9 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | -0.1 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | +1.7 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | -0.4 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | +1.2 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | +0.4 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | -0.7 |
804,823 | + | yjfC | NOLOHH_04445 | 0.10 | -1.6 |
804,824 | - | yjfC | NOLOHH_04445 | 0.10 | +0.5 |
804,824 | - | yjfC | NOLOHH_04445 | 0.10 | -4.3 |
804,824 | - | yjfC | NOLOHH_04445 | 0.10 | +0.4 |
804,824 | - | yjfC | NOLOHH_04445 | 0.10 | -1.4 |
804,824 | - | yjfC | NOLOHH_04445 | 0.10 | -1.6 |
804,824 | - | yjfC | NOLOHH_04445 | 0.10 | +1.1 |
804,863 | - | yjfC | NOLOHH_04445 | 0.14 | +0.1 |
804,863 | - | yjfC | NOLOHH_04445 | 0.14 | +0.0 |
804,955 | + | yjfC | NOLOHH_04445 | 0.21 | -0.1 |
804,956 | - | yjfC | NOLOHH_04445 | 0.22 | +0.9 |
804,966 | - | yjfC | NOLOHH_04445 | 0.22 | -0.8 |
804,974 | - | yjfC | NOLOHH_04445 | 0.23 | -2.1 |
804,974 | - | yjfC | NOLOHH_04445 | 0.23 | -0.4 |
805,076 | + | yjfC | NOLOHH_04445 | 0.32 | -0.3 |
805,077 | - | yjfC | NOLOHH_04445 | 0.32 | +1.6 |
805,080 | - | yjfC | NOLOHH_04445 | 0.32 | +1.6 |
805,088 | + | yjfC | NOLOHH_04445 | 0.33 | +2.7 |
805,181 | + | yjfC | NOLOHH_04445 | 0.41 | -3.1 |
805,222 | - | yjfC | NOLOHH_04445 | 0.44 | -1.1 |
805,255 | + | yjfC | NOLOHH_04445 | 0.47 | +0.4 |
805,255 | + | yjfC | NOLOHH_04445 | 0.47 | -4.4 |
805,256 | - | yjfC | NOLOHH_04445 | 0.47 | -0.1 |
805,256 | - | yjfC | NOLOHH_04445 | 0.47 | +0.1 |
805,256 | - | yjfC | NOLOHH_04445 | 0.47 | -0.4 |
805,259 | + | yjfC | NOLOHH_04445 | 0.48 | -0.4 |
805,259 | + | yjfC | NOLOHH_04445 | 0.48 | -4.3 |
805,303 | + | yjfC | NOLOHH_04445 | 0.51 | -3.7 |
805,304 | - | yjfC | NOLOHH_04445 | 0.51 | -4.6 |
805,304 | - | yjfC | NOLOHH_04445 | 0.51 | -1.3 |
805,304 | - | yjfC | NOLOHH_04445 | 0.51 | +0.9 |
805,304 | - | yjfC | NOLOHH_04445 | 0.51 | +0.9 |
805,313 | + | yjfC | NOLOHH_04445 | 0.52 | +1.2 |
805,369 | + | yjfC | NOLOHH_04445 | 0.57 | +1.2 |
805,369 | + | yjfC | NOLOHH_04445 | 0.57 | +0.8 |
805,369 | + | yjfC | NOLOHH_04445 | 0.57 | -0.4 |
805,379 | + | yjfC | NOLOHH_04445 | 0.58 | -0.9 |
805,414 | + | yjfC | NOLOHH_04445 | 0.61 | +0.3 |
805,415 | - | yjfC | NOLOHH_04445 | 0.61 | -5.0 |
805,492 | + | yjfC | NOLOHH_04445 | 0.68 | +1.7 |
805,492 | + | yjfC | NOLOHH_04445 | 0.68 | -0.6 |
805,492 | + | yjfC | NOLOHH_04445 | 0.68 | -4.0 |
805,493 | - | yjfC | NOLOHH_04445 | 0.68 | -3.3 |
805,493 | - | yjfC | NOLOHH_04445 | 0.68 | -2.6 |
805,519 | + | yjfC | NOLOHH_04445 | 0.70 | +0.1 |
805,520 | - | yjfC | NOLOHH_04445 | 0.70 | -0.0 |
805,574 | - | yjfC | NOLOHH_04445 | 0.75 | -0.1 |
805,621 | + | yjfC | NOLOHH_04445 | 0.79 | -1.5 |
805,622 | - | yjfC | NOLOHH_04445 | 0.79 | -3.3 |
805,748 | + | yjfC | NOLOHH_04445 | 0.90 | +0.5 |
805,749 | - | yjfC | NOLOHH_04445 | 0.90 | -4.4 |
805,797 | - | -1.1 | |||
805,949 | - | yjfM | NOLOHH_04450 | 0.12 | +1.2 |
805,966 | - | yjfM | NOLOHH_04450 | 0.15 | -0.5 |
805,966 | - | yjfM | NOLOHH_04450 | 0.15 | +0.6 |
805,966 | - | yjfM | NOLOHH_04450 | 0.15 | -0.4 |
806,001 | + | yjfM | NOLOHH_04450 | 0.20 | -2.4 |
806,061 | + | yjfM | NOLOHH_04450 | 0.30 | +0.9 |
806,061 | + | yjfM | NOLOHH_04450 | 0.30 | +0.9 |
806,087 | - | yjfM | NOLOHH_04450 | 0.34 | -2.7 |
806,151 | + | yjfM | NOLOHH_04450 | 0.44 | +1.5 |
806,152 | - | yjfM | NOLOHH_04450 | 0.44 | +0.1 |
806,170 | + | yjfM | NOLOHH_04450 | 0.47 | +0.8 |
806,171 | - | yjfM | NOLOHH_04450 | 0.47 | +0.8 |
806,171 | - | yjfM | NOLOHH_04450 | 0.47 | +0.7 |
806,171 | - | yjfM | NOLOHH_04450 | 0.47 | +0.2 |
806,171 | - | yjfM | NOLOHH_04450 | 0.47 | +1.2 |
806,194 | + | yjfM | NOLOHH_04450 | 0.51 | +1.0 |
806,195 | - | yjfM | NOLOHH_04450 | 0.51 | -3.8 |
806,263 | + | yjfM | NOLOHH_04450 | 0.61 | -0.5 |
806,264 | - | yjfM | NOLOHH_04450 | 0.62 | +0.9 |
806,278 | + | yjfM | NOLOHH_04450 | 0.64 | +0.2 |
806,390 | + | yjfM | NOLOHH_04450 | 0.81 | +1.0 |
806,391 | - | yjfM | NOLOHH_04450 | 0.81 | -4.2 |
806,603 | - | yjfL | NOLOHH_04455 | 0.21 | +2.1 |
806,631 | + | yjfL | NOLOHH_04455 | 0.28 | +0.5 |
806,631 | + | yjfL | NOLOHH_04455 | 0.28 | +0.4 |
806,632 | - | yjfL | NOLOHH_04455 | 0.28 | +1.0 |
806,632 | - | yjfL | NOLOHH_04455 | 0.28 | +0.6 |
806,694 | + | yjfL | NOLOHH_04455 | 0.44 | +0.7 |
Or see this region's nucleotide sequence