Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaiI and proC are separated by 119 nucleotides proC and adrA are separated by 16 nucleotides adrA and psiF are separated by 101 nucleotides psiF and phoA are separated by 118 nucleotides
NOLOHH_01530: yaiI - YaiI/YqxD family protein, at 199,808 to 200,266
yaiI
NOLOHH_01535: proC - pyrroline-5-carboxylate reductase, at 200,386 to 201,195
proC
NOLOHH_01540: adrA - diguanylate cyclase AdrA, at 201,212 to 202,327
adrA
NOLOHH_01545: psiF - phosphate starvation-inducible protein PsiF, at 202,429 to 202,749
psiF
NOLOHH_01550: phoA - alkaline phosphatase, at 202,868 to 204,283
phoA
Position (kb) 201
202
203 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 200.225 kb on - strand at 200.225 kb on - strand at 200.228 kb on + strand at 200.229 kb on - strand at 200.229 kb on - strand at 200.267 kb on - strand at 200.287 kb on - strand at 200.295 kb on - strand at 200.322 kb on + strand at 200.322 kb on + strand at 200.333 kb on - strand at 200.407 kb on - strand at 200.488 kb on + strand, within proC at 200.488 kb on + strand, within proC at 200.489 kb on - strand, within proC at 200.489 kb on - strand, within proC at 200.489 kb on - strand, within proC at 200.616 kb on + strand, within proC at 200.616 kb on + strand, within proC at 200.649 kb on + strand, within proC at 200.670 kb on + strand, within proC at 200.814 kb on + strand, within proC at 200.861 kb on + strand, within proC at 200.861 kb on + strand, within proC at 200.861 kb on + strand, within proC at 200.921 kb on + strand, within proC at 200.921 kb on + strand, within proC at 200.921 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.925 kb on + strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 200.926 kb on - strand, within proC at 201.066 kb on + strand, within proC at 201.066 kb on + strand, within proC at 201.162 kb on + strand at 201.258 kb on + strand at 201.258 kb on + strand at 201.259 kb on - strand at 201.334 kb on + strand, within adrA at 201.335 kb on - strand, within adrA at 201.335 kb on - strand, within adrA at 201.497 kb on - strand, within adrA at 201.497 kb on - strand, within adrA at 201.614 kb on - strand, within adrA at 201.614 kb on - strand, within adrA at 201.614 kb on - strand, within adrA at 201.629 kb on - strand, within adrA at 201.644 kb on + strand, within adrA at 201.649 kb on + strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.650 kb on - strand, within adrA at 201.672 kb on + strand, within adrA at 201.673 kb on - strand, within adrA at 201.721 kb on + strand, within adrA at 201.721 kb on + strand, within adrA at 201.722 kb on - strand, within adrA at 201.788 kb on - strand, within adrA at 201.848 kb on - strand, within adrA at 201.940 kb on + strand, within adrA at 202.008 kb on - strand, within adrA at 202.030 kb on - strand, within adrA at 202.079 kb on + strand, within adrA at 202.079 kb on + strand, within adrA at 202.351 kb on + strand at 202.351 kb on + strand at 202.402 kb on + strand at 202.403 kb on - strand at 202.459 kb on - strand at 202.459 kb on - strand at 202.459 kb on - strand at 202.464 kb on + strand, within psiF at 202.464 kb on + strand, within psiF at 202.465 kb on - strand, within psiF at 202.468 kb on - strand, within psiF at 202.468 kb on - strand, within psiF at 202.468 kb on - strand, within psiF at 202.510 kb on - strand, within psiF at 202.592 kb on + strand, within psiF at 202.592 kb on + strand, within psiF at 202.592 kb on + strand, within psiF at 202.592 kb on + strand, within psiF at 202.593 kb on - strand, within psiF at 202.593 kb on - strand, within psiF at 202.593 kb on - strand, within psiF at 202.593 kb on - strand, within psiF at 202.599 kb on + strand, within psiF at 202.600 kb on - strand, within psiF at 202.653 kb on + strand, within psiF at 202.654 kb on - strand, within psiF at 202.703 kb on - strand, within psiF at 202.729 kb on - strand at 202.736 kb on - strand at 202.741 kb on + strand at 202.741 kb on + strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.742 kb on - strand at 202.749 kb on + strand at 202.750 kb on - strand at 202.750 kb on - strand at 202.805 kb on + strand at 202.805 kb on + strand at 202.869 kb on + strand at 202.870 kb on - strand at 202.899 kb on + strand at 202.899 kb on + strand at 202.900 kb on - strand at 202.900 kb on - strand at 202.963 kb on + strand at 202.982 kb on - strand at 202.982 kb on - strand at 203.124 kb on - strand, within phoA at 203.134 kb on + strand, within phoA at 203.135 kb on - strand, within phoA at 203.135 kb on - strand, within phoA at 203.172 kb on - strand, within phoA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 200,225 - +2.0 200,225 - +1.5 200,228 + -0.4 200,229 - -0.0 200,229 - +0.5 200,267 - +0.4 200,287 - +0.2 200,295 - -0.9 200,322 + +0.5 200,322 + -0.0 200,333 - +0.1 200,407 - -2.6 200,488 + proC NOLOHH_01535 0.13 -2.6 200,488 + proC NOLOHH_01535 0.13 -4.2 200,489 - proC NOLOHH_01535 0.13 -1.0 200,489 - proC NOLOHH_01535 0.13 -3.3 200,489 - proC NOLOHH_01535 0.13 -2.6 200,616 + proC NOLOHH_01535 0.28 +0.6 200,616 + proC NOLOHH_01535 0.28 -2.6 200,649 + proC NOLOHH_01535 0.32 -2.3 200,670 + proC NOLOHH_01535 0.35 -3.6 200,814 + proC NOLOHH_01535 0.53 -2.0 200,861 + proC NOLOHH_01535 0.59 -2.4 200,861 + proC NOLOHH_01535 0.59 -3.4 200,861 + proC NOLOHH_01535 0.59 -2.8 200,921 + proC NOLOHH_01535 0.66 -2.4 200,921 + proC NOLOHH_01535 0.66 -2.5 200,921 + proC NOLOHH_01535 0.66 -2.9 200,925 + proC NOLOHH_01535 0.67 -4.6 200,925 + proC NOLOHH_01535 0.67 -3.6 200,925 + proC NOLOHH_01535 0.67 -3.7 200,925 + proC NOLOHH_01535 0.67 -3.2 200,925 + proC NOLOHH_01535 0.67 -4.0 200,926 - proC NOLOHH_01535 0.67 -2.8 200,926 - proC NOLOHH_01535 0.67 -2.3 200,926 - proC NOLOHH_01535 0.67 -0.4 200,926 - proC NOLOHH_01535 0.67 -2.6 200,926 - proC NOLOHH_01535 0.67 -3.0 201,066 + proC NOLOHH_01535 0.84 -4.0 201,066 + proC NOLOHH_01535 0.84 -2.9 201,162 + +0.6 201,258 + +1.1 201,258 + -3.2 201,259 - +0.5 201,334 + adrA NOLOHH_01540 0.11 -1.4 201,335 - adrA NOLOHH_01540 0.11 +1.3 201,335 - adrA NOLOHH_01540 0.11 +0.9 201,497 - adrA NOLOHH_01540 0.26 +0.0 201,497 - adrA NOLOHH_01540 0.26 -0.9 201,614 - adrA NOLOHH_01540 0.36 +0.1 201,614 - adrA NOLOHH_01540 0.36 -0.6 201,614 - adrA NOLOHH_01540 0.36 +1.7 201,629 - adrA NOLOHH_01540 0.37 -0.9 201,644 + adrA NOLOHH_01540 0.39 -0.5 201,649 + adrA NOLOHH_01540 0.39 +0.6 201,650 - adrA NOLOHH_01540 0.39 +1.1 201,650 - adrA NOLOHH_01540 0.39 -0.5 201,650 - adrA NOLOHH_01540 0.39 +2.2 201,650 - adrA NOLOHH_01540 0.39 -0.4 201,650 - adrA NOLOHH_01540 0.39 +0.0 201,650 - adrA NOLOHH_01540 0.39 -3.3 201,650 - adrA NOLOHH_01540 0.39 +1.3 201,672 + adrA NOLOHH_01540 0.41 -4.1 201,673 - adrA NOLOHH_01540 0.41 +1.5 201,721 + adrA NOLOHH_01540 0.46 +1.2 201,721 + adrA NOLOHH_01540 0.46 +0.6 201,722 - adrA NOLOHH_01540 0.46 -2.7 201,788 - adrA NOLOHH_01540 0.52 -0.1 201,848 - adrA NOLOHH_01540 0.57 +0.4 201,940 + adrA NOLOHH_01540 0.65 -4.7 202,008 - adrA NOLOHH_01540 0.71 +0.7 202,030 - adrA NOLOHH_01540 0.73 +1.1 202,079 + adrA NOLOHH_01540 0.78 -3.5 202,079 + adrA NOLOHH_01540 0.78 -0.9 202,351 + -3.1 202,351 + +0.7 202,402 + -4.1 202,403 - -0.6 202,459 - -0.5 202,459 - -0.6 202,459 - -0.6 202,464 + psiF NOLOHH_01545 0.11 +1.2 202,464 + psiF NOLOHH_01545 0.11 -1.1 202,465 - psiF NOLOHH_01545 0.11 +0.4 202,468 - psiF NOLOHH_01545 0.12 -0.1 202,468 - psiF NOLOHH_01545 0.12 -4.5 202,468 - psiF NOLOHH_01545 0.12 -1.3 202,510 - psiF NOLOHH_01545 0.25 +0.7 202,592 + psiF NOLOHH_01545 0.51 -1.0 202,592 + psiF NOLOHH_01545 0.51 +1.7 202,592 + psiF NOLOHH_01545 0.51 +0.7 202,592 + psiF NOLOHH_01545 0.51 -4.2 202,593 - psiF NOLOHH_01545 0.51 -1.7 202,593 - psiF NOLOHH_01545 0.51 -0.4 202,593 - psiF NOLOHH_01545 0.51 -4.0 202,593 - psiF NOLOHH_01545 0.51 +0.4 202,599 + psiF NOLOHH_01545 0.53 -0.5 202,600 - psiF NOLOHH_01545 0.53 +1.3 202,653 + psiF NOLOHH_01545 0.70 +0.7 202,654 - psiF NOLOHH_01545 0.70 +1.2 202,703 - psiF NOLOHH_01545 0.85 +0.4 202,729 - -0.6 202,736 - -1.6 202,741 + +1.2 202,741 + -0.8 202,742 - +1.9 202,742 - -2.1 202,742 - -1.1 202,749 + -1.2 202,750 - +0.6 202,750 - -2.5 202,805 + -0.9 202,805 + -4.5 202,869 + -4.2 202,870 - -1.4 202,899 + +0.5 202,899 + -0.7 202,900 - +1.1 202,900 - -4.7 202,963 + +2.0 202,982 - -2.1 202,982 - -0.1 203,124 - phoA NOLOHH_01550 0.18 -1.0 203,134 + phoA NOLOHH_01550 0.19 -2.4 203,135 - phoA NOLOHH_01550 0.19 +0.8 203,135 - phoA NOLOHH_01550 0.19 -1.3 203,172 - phoA NOLOHH_01550 0.21 -1.5
Or see this region's nucleotide sequence