Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kch and yciI are separated by 300 nucleotides yciI and tonB are separated by 223 nucleotides tonB and yciA are separated by 39 nucleotides yciA and yciB are separated by 104 nucleotides
OKFHMN_28665: kch - voltage-gated potassium channel protein, at 5,500,477 to 5,501,730
kch
OKFHMN_28670: yciI - YciI family protein, at 5,502,031 to 5,502,327
yciI
OKFHMN_28675: tonB - TonB system transport protein TonB, at 5,502,551 to 5,503,270
tonB
OKFHMN_28680: yciA - acyl-CoA thioester hydrolase YciA, at 5,503,310 to 5,503,708
yciA
OKFHMN_28685: yciB - septation protein A, at 5,503,813 to 5,504,352
yciB
Position (kb) 5502
5503
5504 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5501.735 kb on - strand at 5501.909 kb on - strand at 5501.933 kb on + strand at 5502.090 kb on - strand, within yciI at 5502.316 kb on - strand at 5502.356 kb on + strand at 5502.357 kb on - strand at 5502.529 kb on + strand at 5502.636 kb on - strand, within tonB at 5502.645 kb on + strand, within tonB at 5503.122 kb on + strand, within tonB at 5503.122 kb on + strand, within tonB at 5503.360 kb on - strand, within yciA at 5503.364 kb on - strand, within yciA at 5503.703 kb on - strand at 5503.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,501,735 - -0.4 5,501,909 - -0.2 5,501,933 + +0.6 5,502,090 - yciI OKFHMN_28670 0.20 -0.2 5,502,316 - +0.8 5,502,356 + -2.6 5,502,357 - +0.2 5,502,529 + -0.2 5,502,636 - tonB OKFHMN_28675 0.12 -2.3 5,502,645 + tonB OKFHMN_28675 0.13 -1.2 5,503,122 + tonB OKFHMN_28675 0.79 -3.2 5,503,122 + tonB OKFHMN_28675 0.79 +0.4 5,503,360 - yciA OKFHMN_28680 0.13 -1.0 5,503,364 - yciA OKFHMN_28680 0.14 +0.4 5,503,703 - +0.4 5,503,848 + +0.1
Or see this region's nucleotide sequence