Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28645

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntoppB and oppC are separated by 14 nucleotidesoppC and oppD are separated by 11 nucleotidesoppD and oppF overlap by 4 nucleotides OKFHMN_28635: oppB - oligopeptide ABC transporter permease OppB, at 5,494,360 to 5,495,280 oppB OKFHMN_28640: oppC - oligopeptide ABC transporter permease OppC, at 5,495,295 to 5,496,203 oppC OKFHMN_28645: oppD - murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD, at 5,496,215 to 5,497,228 oppD OKFHMN_28650: oppF - murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF, at 5,497,225 to 5,498,229 oppF Position (kb) 5496 5497 5498Strain fitness (log2 ratio) -1 0 1at 5495.302 kb on + strandat 5495.978 kb on - strand, within oppCat 5496.351 kb on + strand, within oppDat 5496.572 kb on + strand, within oppDat 5496.572 kb on + strand, within oppDat 5496.765 kb on + strand, within oppDat 5497.410 kb on + strand, within oppF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,495,302 + -0.3
5,495,978 - oppC OKFHMN_28640 0.75 +0.6
5,496,351 + oppD OKFHMN_28645 0.13 -0.1
5,496,572 + oppD OKFHMN_28645 0.35 +1.1
5,496,572 + oppD OKFHMN_28645 0.35 +1.4
5,496,765 + oppD OKFHMN_28645 0.54 +0.8
5,497,410 + oppF OKFHMN_28650 0.18 -0.3

Or see this region's nucleotide sequence