Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purU and ychJ are separated by 49 nucleotides ychJ and rssA are separated by 73 nucleotides rssA and rssB are separated by 91 nucleotides
OKFHMN_28570: purU - formyltetrahydrofolate deformylase, at 5,481,444 to 5,482,286
purU
OKFHMN_28575: ychJ - YchJ family protein, at 5,482,336 to 5,482,794
ychJ
OKFHMN_28580: rssA - patatin-like phospholipase RssA, at 5,482,868 to 5,483,812
rssA
OKFHMN_28585: rssB - two-component system response regulator RssB, at 5,483,904 to 5,484,917
rssB
Position (kb) 5482
5483
5484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5481.915 kb on + strand, within purU at 5482.253 kb on + strand at 5482.425 kb on - strand, within ychJ at 5482.648 kb on + strand, within ychJ at 5482.653 kb on - strand, within ychJ at 5482.737 kb on - strand, within ychJ at 5482.737 kb on - strand, within ychJ at 5482.750 kb on + strand at 5482.755 kb on + strand at 5483.193 kb on + strand, within rssA at 5483.710 kb on + strand, within rssA at 5483.833 kb on + strand at 5483.863 kb on + strand at 5483.874 kb on + strand at 5484.070 kb on + strand, within rssB at 5484.070 kb on + strand, within rssB at 5484.070 kb on + strand, within rssB at 5484.070 kb on + strand, within rssB at 5484.071 kb on - strand, within rssB at 5484.071 kb on - strand, within rssB at 5484.071 kb on - strand, within rssB at 5484.104 kb on + strand, within rssB at 5484.121 kb on + strand, within rssB at 5484.126 kb on - strand, within rssB at 5484.182 kb on + strand, within rssB at 5484.196 kb on + strand, within rssB at 5484.422 kb on + strand, within rssB at 5484.694 kb on + strand, within rssB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,481,915 + purU OKFHMN_28570 0.56 -2.2 5,482,253 + -1.4 5,482,425 - ychJ OKFHMN_28575 0.19 +0.5 5,482,648 + ychJ OKFHMN_28575 0.68 -0.5 5,482,653 - ychJ OKFHMN_28575 0.69 -1.2 5,482,737 - ychJ OKFHMN_28575 0.87 +1.1 5,482,737 - ychJ OKFHMN_28575 0.87 +0.7 5,482,750 + +1.6 5,482,755 + -0.7 5,483,193 + rssA OKFHMN_28580 0.34 +0.4 5,483,710 + rssA OKFHMN_28580 0.89 -0.5 5,483,833 + -0.9 5,483,863 + +1.2 5,483,874 + +0.7 5,484,070 + rssB OKFHMN_28585 0.16 -0.3 5,484,070 + rssB OKFHMN_28585 0.16 -0.0 5,484,070 + rssB OKFHMN_28585 0.16 -1.5 5,484,070 + rssB OKFHMN_28585 0.16 -0.7 5,484,071 - rssB OKFHMN_28585 0.16 +0.2 5,484,071 - rssB OKFHMN_28585 0.16 +0.5 5,484,071 - rssB OKFHMN_28585 0.16 -3.9 5,484,104 + rssB OKFHMN_28585 0.20 +0.5 5,484,121 + rssB OKFHMN_28585 0.21 +1.8 5,484,126 - rssB OKFHMN_28585 0.22 -1.5 5,484,182 + rssB OKFHMN_28585 0.27 -0.3 5,484,196 + rssB OKFHMN_28585 0.29 +1.3 5,484,422 + rssB OKFHMN_28585 0.51 +0.6 5,484,694 + rssB OKFHMN_28585 0.78 +0.1
Or see this region's nucleotide sequence