Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28105

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_28095 and OKFHMN_28100 overlap by 4 nucleotidesOKFHMN_28100 and OKFHMN_28105 are separated by 60 nucleotidesOKFHMN_28105 and lomR are separated by 66 nucleotideslomR and OKFHMN_28115 are separated by 64 nucleotides OKFHMN_28095: OKFHMN_28095 - phage tail protein, at 5,391,314 to 5,392,057 _28095 OKFHMN_28100: OKFHMN_28100 - tail assembly protein, at 5,392,054 to 5,392,626 _28100 OKFHMN_28105: OKFHMN_28105 - phage portal protein, at 5,392,687 to 5,396,085 _28105 OKFHMN_28110: lomR - Ail/Lom family protein, at 5,396,152 to 5,396,751 lomR OKFHMN_28115: OKFHMN_28115 - Prophage tail fibre N-terminal, at 5,396,816 to 5,399,731 _28115 Position (kb) 5392 5393 5394 5395 5396 5397Strain fitness (log2 ratio) -3 -2 -1 0 1at 5392.187 kb on + strand, within OKFHMN_28100at 5392.972 kb on + strandat 5392.973 kb on - strandat 5393.108 kb on + strand, within OKFHMN_28105at 5393.393 kb on - strand, within OKFHMN_28105at 5393.489 kb on - strand, within OKFHMN_28105

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,392,187 + OKFHMN_28100 0.23 +0.5
5,392,972 + +0.3
5,392,973 - -1.3
5,393,108 + OKFHMN_28105 0.12 -3.7
5,393,393 - OKFHMN_28105 0.21 -0.5
5,393,489 - OKFHMN_28105 0.24 -1.3

Or see this region's nucleotide sequence